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[bioontology-support] bioontology-support Digest, Vol 51, Issue 22

Erich Gombocz egombocz at io-informatics.com
Thu Jul 19 15:40:09 PDT 2012


Dear Nigam and All,

I've tried your search too. It works excellent (millisecond responses) in IE, FireFox and Safari; however, in Chrome it hangs for long as you noticed - this seems to be an issue with how Chrome handles the space in search terms - if you have searches without a space, Chrome is fast too.

Hope, this helps. May be a character conversion issue.

Erich

Erich A. Gombocz
Vice President, Chief Scientific Officer

IO Informatics, Inc.
2550 Ninth Street, Suite 114
Berkeley, CA 94710-2552, USA

Phone:   (510) 705-8470
Fax:     (510) 705-8476
Mobile:  (415) 740-9416
Email:   egombocz at io-informatics.com
Web:     www.io-informatics.com



-----Original Message-----
From: bioontology-support-bounces at lists.stanford.edu [mailto:bioontology-support-bounces at lists.stanford.edu] On Behalf Of bioontology-support-request at lists.stanford.edu
Sent: Thursday, July 19, 2012 2:41 PM
To: bioontology-support at lists.stanford.edu
Subject: bioontology-support Digest, Vol 51, Issue 22

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Today's Topics:

   1. [BioPortal] Feedback from Nigam Shah (support at bioontology.org)
   2. Re: [BioPortal] Feedback from Nigam Shah (Paul R Alexander)
   3. Re: [BioPortal] Feedback from Nigam Shah (Nigam Shah)
   4. BioPortal is down? (Rob Wynden)
   5. Bioportal down? (marc)
   6. Re: Bioportal down? (Paul R Alexander)
   7. Re: BioPortal is down? (Paul R Alexander)


----------------------------------------------------------------------

Message: 1
Date: Thu, 19 Jul 2012 12:06:04 -0700
From: support at bioontology.org
To: support at bioontology.org,	 nigam at stanford.edu
Subject: [bioontology-support] [BioPortal] Feedback from Nigam Shah
Message-ID:
	<50085a9cd26fd_6d734ef709617a at ncboprod-ror1.stanford.edu.tmail>
Content-Type: text/plain; charset=utf-8


Name: Nigam Shah

Email: nigam at stanford.edu

Location: http://bioportal.bioontology.org/search

Comment:
Search is unresponsive. Page dies in chrome after about 3-4 minutes. 

Also, the captcha are so hard that you are loosing humans in the process. Seriously, who will spend 5 attempts to file a report .. most will just move on.


------------------------------

Message: 2
Date: Thu, 19 Jul 2012 12:18:38 -0700
From: Paul R Alexander <palexander at stanford.edu>
To: support at bioontology.org
Cc: nigam at stanford.edu
Subject: Re: [bioontology-support] [BioPortal] Feedback from Nigam
	Shah
Message-ID: <50085D8E.5010909 at stanford.edu>
Content-Type: text/plain; charset=UTF-8; format=flowed

Nigam,

Can you provide the keywords you were using in the search? The several I tried worked fine.

Paul


On Thu Jul 19 12:06:04 2012, support at bioontology.org wrote:
>
> Name: Nigam Shah
>
> Email: nigam at stanford.edu
>
> Location: http://bioportal.bioontology.org/search
>
> Comment:
> Search is unresponsive. Page dies in chrome after about 3-4 minutes.
>
> Also, the captcha are so hard that you are loosing humans in the process. Seriously, who will spend 5 attempts to file a report .. most will just move on.
> _______________________________________________
> bioontology-support mailing list
> bioontology-support at lists.stanford.edu
> https://mailman.stanford.edu/mailman/listinfo/bioontology-support


------------------------------

Message: 3
Date: Thu, 19 Jul 2012 12:21:14 -0700
From: Nigam Shah <nigam at stanford.edu>
To: Paul R Alexander <palexander at stanford.edu>
Cc: support at bioontology.org
Subject: Re: [bioontology-support] [BioPortal] Feedback from Nigam
	Shah
Message-ID:
	<CAKcKXaUtV2wjKyg5gTmVbqqw4XzTw2g0vLbfa4SdhAxHm_6z1g at mail.gmail.com>
Content-Type: text/plain; charset="iso-8859-1"

I was trying 'Malignant Melanoma' .. first across all ontologies (took about 2 minutes) and then just in the human disease ontology (where the page became unresponsive after 3 minutes or so and had to kill it).
Happened twice .. the exact same behavior.

Also, the human disease ontology has a parse error in its latest version.
And the browsable version, won't allow the 'Jump to' (because it's not the latest version!). .. that is what got me to using search.

--Nigam.

On Thu, Jul 19, 2012 at 12:18 PM, Paul R Alexander
<palexander at stanford.edu>wrote:

> Nigam,
>
> Can you provide the keywords you were using in the search? The several 
> I tried worked fine.
>
> Paul
>
>
> On Thu Jul 19 12:06:04 2012, support at bioontology.org wrote:
>
>>
>> Name: Nigam Shah
>>
>> Email: nigam at stanford.edu
>>
>> Location: 
>> http://bioportal.bioontology.**org/search<http://bioportal.bioontolog
>> y.org/search>
>>
>> Comment:
>> Search is unresponsive. Page dies in chrome after about 3-4 minutes.
>>
>> Also, the captcha are so hard that you are loosing humans in the process.
>> Seriously, who will spend 5 attempts to file a report .. most will 
>> just move on.
>> ______________________________**_________________
>> bioontology-support mailing list
>> bioontology-support at lists.**stanford.edu<bioontology-support at lists.st
>> anford.edu> 
>> https://mailman.stanford.edu/**mailman/listinfo/bioontology-**support
>> <https://mailman.stanford.edu/mailman/listinfo/bioontology-support>
>>
>
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Message: 4
Date: Thu, 19 Jul 2012 14:18:53 -0700
From: "Rob Wynden" <rob.wynden at ucsf.edu>
To: "support at bioontology.org" <support at bioontology.org>
Subject: [bioontology-support] BioPortal is down?
Message-ID: <500879BD.2030304 at ucsf.edu>
Content-Type: text/plain; charset="iso-8859-1"

Hi,

Is the BioPortal down?

Rob

--
Rob Wynden
Chief Scientist, IHPS Informatics Lab
Phillip R Lee Institute of Health Policy Studies UCSF

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Message: 5
Date: Thu, 19 Jul 2012 14:36:07 -0700 (PDT)
From: marc <marc at cybre.net>
To: support at bioontology.org
Subject: [bioontology-support] Bioportal down?
Message-ID: <alpine.DEB.2.00.1207191434570.9669 at cybre.net>
Content-Type: TEXT/PLAIN; charset=US-ASCII; format=flowed


Hi, it seems that the bioportal is down in that it will not pull up anything but a summary page on the web and the REST services are all returning 500/Internal Server Error HTTP codes.

-marc


------------------------------

Message: 6
Date: Thu, 19 Jul 2012 14:40:50 -0700
From: Paul R Alexander <palexander at stanford.edu>
To: marc <marc at cybre.net>
Cc: support at bioontology.org
Subject: Re: [bioontology-support] Bioportal down?
Message-ID: <50087EE2.1060800 at stanford.edu>
Content-Type: text/plain; charset=ISO-8859-1; format=flowed

Thanks Marc, we're looking into this.

Paul R Alexander
Senior Software Engineer
NCBO BioPortal
Stanford Center for Biomedical Informatics Research


On 7/19/12 2:36 PM, marc wrote:
>
> Hi, it seems that the bioportal is down in that it will not pull up 
> anything but a summary page on the web and the REST services are all 
> returning 500/Internal Server Error HTTP codes.
>
> -marc



------------------------------

Message: 7
Date: Thu, 19 Jul 2012 14:41:25 -0700
From: Paul R Alexander <palexander at stanford.edu>
To: Rob Wynden <rob.wynden at ucsf.edu>
Cc: "support at bioontology.org" <support at bioontology.org>
Subject: Re: [bioontology-support] BioPortal is down?
Message-ID: <50087F05.60606 at stanford.edu>
Content-Type: text/plain; charset="iso-8859-1"; Format="flowed"

Rob,

Thanks for the report. We're looking into this.

Paul R Alexander
Senior Software Engineer
NCBO BioPortal
Stanford Center for Biomedical Informatics Research


On 7/19/12 2:18 PM, Rob Wynden wrote:
> Hi,
>
> Is the BioPortal down?
>
> Rob
>
> --
> Rob Wynden
> Chief Scientist, IHPS Informatics Lab
> Phillip R Lee Institute of Health Policy Studies UCSF
>
>
> _______________________________________________
> bioontology-support mailing list
> bioontology-support at lists.stanford.edu
> https://mailman.stanford.edu/mailman/listinfo/bioontology-support

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End of bioontology-support Digest, Vol 51, Issue 22
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