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[bioontology-support] bioontology-support Digest, Vol 51, Issue 22

Paul R Alexander palexander at stanford.edu
Thu Jul 19 16:05:49 PDT 2012


Erich and Nigam,

If you are still having the issue, can you try clearing your browser 
cache (holding shift and clicking the refresh button will do this) and 
then searching again? Thanks for your patience and help in tracking this 
down.

Paul


On 7/19/12 3:40 PM, Erich Gombocz wrote:
> Dear Nigam and All,
>
> I've tried your search too. It works excellent (millisecond responses) in IE, FireFox and Safari; however, in Chrome it hangs for long as you noticed - this seems to be an issue with how Chrome handles the space in search terms - if you have searches without a space, Chrome is fast too.
>
> Hope, this helps. May be a character conversion issue.
>
> Erich
>
> Erich A. Gombocz
> Vice President, Chief Scientific Officer
>
> IO Informatics, Inc.
> 2550 Ninth Street, Suite 114
> Berkeley, CA 94710-2552, USA
>
> Phone:   (510) 705-8470
> Fax:     (510) 705-8476
> Mobile:  (415) 740-9416
> Email:   egombocz at io-informatics.com
> Web:     www.io-informatics.com
>
>
>
> -----Original Message-----
> From: bioontology-support-bounces at lists.stanford.edu [mailto:bioontology-support-bounces at lists.stanford.edu] On Behalf Of bioontology-support-request at lists.stanford.edu
> Sent: Thursday, July 19, 2012 2:41 PM
> To: bioontology-support at lists.stanford.edu
> Subject: bioontology-support Digest, Vol 51, Issue 22
>
> Send bioontology-support mailing list submissions to
> 	bioontology-support at lists.stanford.edu
>
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> or, via email, send a message with subject or body 'help' to
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> When replying, please edit your Subject line so it is more specific than "Re: Contents of bioontology-support digest..."
>
>
> Today's Topics:
>
>     1. [BioPortal] Feedback from Nigam Shah (support at bioontology.org)
>     2. Re: [BioPortal] Feedback from Nigam Shah (Paul R Alexander)
>     3. Re: [BioPortal] Feedback from Nigam Shah (Nigam Shah)
>     4. BioPortal is down? (Rob Wynden)
>     5. Bioportal down? (marc)
>     6. Re: Bioportal down? (Paul R Alexander)
>     7. Re: BioPortal is down? (Paul R Alexander)
>
>
> ----------------------------------------------------------------------
>
> Message: 1
> Date: Thu, 19 Jul 2012 12:06:04 -0700
> From: support at bioontology.org
> To: support at bioontology.org,	 nigam at stanford.edu
> Subject: [bioontology-support] [BioPortal] Feedback from Nigam Shah
> Message-ID:
> 	<50085a9cd26fd_6d734ef709617a at ncboprod-ror1.stanford.edu.tmail>
> Content-Type: text/plain; charset=utf-8
>
>
> Name: Nigam Shah
>
> Email: nigam at stanford.edu
>
> Location: http://bioportal.bioontology.org/search
>
> Comment:
> Search is unresponsive. Page dies in chrome after about 3-4 minutes.
>
> Also, the captcha are so hard that you are loosing humans in the process. Seriously, who will spend 5 attempts to file a report .. most will just move on.
>
>
> ------------------------------
>
> Message: 2
> Date: Thu, 19 Jul 2012 12:18:38 -0700
> From: Paul R Alexander <palexander at stanford.edu>
> To: support at bioontology.org
> Cc: nigam at stanford.edu
> Subject: Re: [bioontology-support] [BioPortal] Feedback from Nigam
> 	Shah
> Message-ID: <50085D8E.5010909 at stanford.edu>
> Content-Type: text/plain; charset=UTF-8; format=flowed
>
> Nigam,
>
> Can you provide the keywords you were using in the search? The several I tried worked fine.
>
> Paul
>
>
> On Thu Jul 19 12:06:04 2012, support at bioontology.org wrote:
>> Name: Nigam Shah
>>
>> Email: nigam at stanford.edu
>>
>> Location: http://bioportal.bioontology.org/search
>>
>> Comment:
>> Search is unresponsive. Page dies in chrome after about 3-4 minutes.
>>
>> Also, the captcha are so hard that you are loosing humans in the process. Seriously, who will spend 5 attempts to file a report .. most will just move on.
>> _______________________________________________
>> bioontology-support mailing list
>> bioontology-support at lists.stanford.edu
>> https://mailman.stanford.edu/mailman/listinfo/bioontology-support
>
> ------------------------------
>
> Message: 3
> Date: Thu, 19 Jul 2012 12:21:14 -0700
> From: Nigam Shah <nigam at stanford.edu>
> To: Paul R Alexander <palexander at stanford.edu>
> Cc: support at bioontology.org
> Subject: Re: [bioontology-support] [BioPortal] Feedback from Nigam
> 	Shah
> Message-ID:
> 	<CAKcKXaUtV2wjKyg5gTmVbqqw4XzTw2g0vLbfa4SdhAxHm_6z1g at mail.gmail.com>
> Content-Type: text/plain; charset="iso-8859-1"
>
> I was trying 'Malignant Melanoma' .. first across all ontologies (took about 2 minutes) and then just in the human disease ontology (where the page became unresponsive after 3 minutes or so and had to kill it).
> Happened twice .. the exact same behavior.
>
> Also, the human disease ontology has a parse error in its latest version.
> And the browsable version, won't allow the 'Jump to' (because it's not the latest version!). .. that is what got me to using search.
>
> --Nigam.
>
> On Thu, Jul 19, 2012 at 12:18 PM, Paul R Alexander
> <palexander at stanford.edu>wrote:
>
>> Nigam,
>>
>> Can you provide the keywords you were using in the search? The several
>> I tried worked fine.
>>
>> Paul
>>
>>
>> On Thu Jul 19 12:06:04 2012, support at bioontology.org wrote:
>>
>>> Name: Nigam Shah
>>>
>>> Email: nigam at stanford.edu
>>>
>>> Location:
>>> http://bioportal.bioontology.**org/search<http://bioportal.bioontolog
>>> y.org/search>
>>>
>>> Comment:
>>> Search is unresponsive. Page dies in chrome after about 3-4 minutes.
>>>
>>> Also, the captcha are so hard that you are loosing humans in the process.
>>> Seriously, who will spend 5 attempts to file a report .. most will
>>> just move on.
>>> ______________________________**_________________
>>> bioontology-support mailing list
>>> bioontology-support at lists.**stanford.edu<bioontology-support at lists.st
>>> anford.edu>
>>> https://mailman.stanford.edu/**mailman/listinfo/bioontology-**support
>>> <https://mailman.stanford.edu/mailman/listinfo/bioontology-support>
>>>
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>
> ------------------------------
>
> Message: 4
> Date: Thu, 19 Jul 2012 14:18:53 -0700
> From: "Rob Wynden" <rob.wynden at ucsf.edu>
> To: "support at bioontology.org" <support at bioontology.org>
> Subject: [bioontology-support] BioPortal is down?
> Message-ID: <500879BD.2030304 at ucsf.edu>
> Content-Type: text/plain; charset="iso-8859-1"
>
> Hi,
>
> Is the BioPortal down?
>
> Rob
>
> --
> Rob Wynden
> Chief Scientist, IHPS Informatics Lab
> Phillip R Lee Institute of Health Policy Studies UCSF
>
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> ------------------------------
>
> Message: 5
> Date: Thu, 19 Jul 2012 14:36:07 -0700 (PDT)
> From: marc <marc at cybre.net>
> To: support at bioontology.org
> Subject: [bioontology-support] Bioportal down?
> Message-ID: <alpine.DEB.2.00.1207191434570.9669 at cybre.net>
> Content-Type: TEXT/PLAIN; charset=US-ASCII; format=flowed
>
>
> Hi, it seems that the bioportal is down in that it will not pull up anything but a summary page on the web and the REST services are all returning 500/Internal Server Error HTTP codes.
>
> -marc
>
>
> ------------------------------
>
> Message: 6
> Date: Thu, 19 Jul 2012 14:40:50 -0700
> From: Paul R Alexander <palexander at stanford.edu>
> To: marc <marc at cybre.net>
> Cc: support at bioontology.org
> Subject: Re: [bioontology-support] Bioportal down?
> Message-ID: <50087EE2.1060800 at stanford.edu>
> Content-Type: text/plain; charset=ISO-8859-1; format=flowed
>
> Thanks Marc, we're looking into this.
>
> Paul R Alexander
> Senior Software Engineer
> NCBO BioPortal
> Stanford Center for Biomedical Informatics Research
>
>
> On 7/19/12 2:36 PM, marc wrote:
>> Hi, it seems that the bioportal is down in that it will not pull up
>> anything but a summary page on the web and the REST services are all
>> returning 500/Internal Server Error HTTP codes.
>>
>> -marc
>
>
> ------------------------------
>
> Message: 7
> Date: Thu, 19 Jul 2012 14:41:25 -0700
> From: Paul R Alexander <palexander at stanford.edu>
> To: Rob Wynden <rob.wynden at ucsf.edu>
> Cc: "support at bioontology.org" <support at bioontology.org>
> Subject: Re: [bioontology-support] BioPortal is down?
> Message-ID: <50087F05.60606 at stanford.edu>
> Content-Type: text/plain; charset="iso-8859-1"; Format="flowed"
>
> Rob,
>
> Thanks for the report. We're looking into this.
>
> Paul R Alexander
> Senior Software Engineer
> NCBO BioPortal
> Stanford Center for Biomedical Informatics Research
>
>
> On 7/19/12 2:18 PM, Rob Wynden wrote:
>> Hi,
>>
>> Is the BioPortal down?
>>
>> Rob
>>
>> --
>> Rob Wynden
>> Chief Scientist, IHPS Informatics Lab
>> Phillip R Lee Institute of Health Policy Studies UCSF
>>
>>
>> _______________________________________________
>> bioontology-support mailing list
>> bioontology-support at lists.stanford.edu
>> https://mailman.stanford.edu/mailman/listinfo/bioontology-support
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> ------------------------------
>
> _______________________________________________
> bioontology-support mailing list
> bioontology-support at lists.stanford.edu
> https://mailman.stanford.edu/mailman/listinfo/bioontology-support
>
>
> End of bioontology-support Digest, Vol 51, Issue 22
> ***************************************************
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