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[bioontology-support] Searching for a term in SNOMED

Paul R Alexander palexander at stanford.edu
Mon Jul 30 11:54:54 PDT 2012


There are tests for the search index process but none that are run on 
an ongoing basis that will ensure all terms for all ontologies exist in 
the index.

Paul


On Mon Jul 30 11:34:39 2012, Trish Whetzel wrote:
> Thanks Paul. Is there a QA process in place to ensure that all terms in an ontology are included in the Search index?
>
> Trish
>
>
> On Jul 28, 2012, at 8:52 PM, Paul R Alexander wrote:
>
>> The index has been updated and the term is now available.
>>
>> Paul R Alexander
>> Senior Software Engineer
>> NCBO BioPortal
>> Stanford Center for Biomedical Informatics Research
>>
>>
>> On Fri Jul 27 14:23:58 2012, Trish Whetzel wrote:
>>> Hi Simona,
>>>
>>> I am able to confirm the results you mention and access the term
>>> "Macrolide" using the link for the "Macrolide" parent term displayed
>>> on "Macrolide (class of antibiotic, substance)" [1].
>>>
>>> Paul, would it make sense to re-index SNOMEDCT as a first step to
>>> resolving this issue?
>>>
>>> Trish
>>>
>>> [1]
>>> http://bioportal.bioontology.org/ontologies/46896/?p=terms&conceptid=372480009
>>>
>>>
>>> On Jul 27, 2012, at 10:46 PM, Carini, Simona wrote:
>>>
>>>> Can anybody explain the behavior I am seeing when I search SNOMED for
>>>> the term: macrolide?
>>>> Whether I type the term in the Jump To field or I use the search in
>>>> ontologies function restricted to SNOMED, the
>>>> term Macrolide with ID428787002
>>>> is not returned.
>>>> However, the term is there and I can see it if I select, "Macrolide
>>>> (class of antibiotic, substance)" - ID 372480009 - and then I click
>>>> on visualization.
>>>>
>>>> Thank you.
>>>> Simona
>>>>
>>>>
>>>>
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>>>> bioontology-support at lists.stanford.edu
>>>> <mailto:bioontology-support at lists.stanford.edu>
>>>> https://mailman.stanford.edu/mailman/listinfo/bioontology-support
>>>
>>>
>>>
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>


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