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[bioontology-support] Support request for the Cardiovascular Research Grid project

Trish Whetzel whetzel at stanford.edu
Mon May 7 10:35:44 PDT 2012


Hi Sanjay, 

I believe there is a mechanism to swap in the Protege database table into the Protege backend for BioPortal. 

Paul, is this what you would recommend and/or can help Sanjay with this item?

Trish 



On May 7, 2012, at 9:09 AM, Agravat, Sanjay wrote:

> Hi,
> 
> I have a local instance of bioportal running  and I’m having a problem loading my ontology into bioportal.   The ontology is stored in the protégé database so I tried uploading the .pprj file with the database located on the same server as bioportal and that didn’t work.  I also tried converting the .pprj to use .pins and .ponts but that didn’t work because the upload form doesn’t take the classes or instances file as input.
> 
> I am not able to export the ontology to .owl since the ontology is  very large and protégé doesn’t seem to be able to do it.  Do you have any suggestions?
> 
> Thanks,
> 
> Sanjay 
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