Search Mailing List Archives


Limit search to: Subject & Body Subject Author
Sort by: Reverse Sort
Limit to: All This Week Last Week This Month Last Month
Select Date Range     through    

[bioontology-support] Help with expression (cutoff)

Rob Wynden rob.wynden at ucsf.edu
Wed May 9 13:02:35 PDT 2012


Wow.  That was fast.



On 5/9/12 1:01 PM, Trish Whetzel wrote:
> The expression is now correctly displayed in the UI:
> http://bioportal.bioontology.org/ontologies/47403/?p=terms&conceptid=MM_CLASS_101
> <http://bioportal.bioontology.org/ontologies/47403/?p=terms&conceptid=MM_CLASS_101>
>
> Trish 
>
>
> On May 9, 2012, at 10:06 AM, Rob Wynden wrote:
>
>> We are supposed to engage Allen by Friday of this week.
>>
>> Rob
>>
>>
>>
>> On 5/9/12 10:02 AM, Trish Whetzel wrote:
>>> Thanks for the additional information. I didn't realize these values
>>> need to be curated. To help prioritize the issue, is this a blocker
>>> for your work and when will you be working with Barry to review this
>>> values?
>>>
>>> Trish 
>>>
>>>
>>> On May 9, 2012, at 9:53 AM, Rob Wynden wrote:
>>>
>>>> Hi,
>>>>
>>>> Well we can't curate HOM Bool expressions on BioPortal if folks
>>>> can't read them.  We are about to start working in with Barry
>>>> Smith's team.  This could hold up the train.
>>>>
>>>> Rob
>>>>
>>>>
>>>>
>>>> On 5/9/12 9:50 AM, Trish Whetzel wrote:
>>>>> Hi Rob and Ketty, 
>>>>>
>>>>> It looks like there is an issue rendering the expression in the
>>>>> Web interface since the "Get Term" web service call returns the
>>>>> expression [1] and also calling the "Get Term" web service from
>>>>> Excel GoogleDocs also returns the expression. I'll submit a bug
>>>>> report related to the rendering issue. Can you confirm this using
>>>>> this ontology is working properly in your application?
>>>>>
>>>>> Trish 
>>>>>
>>>>> [1] http://rest.bioontology.org/bioportal/concepts/47403?conceptid=MM_CLASS_101&apikey=
>>>>> <http://rest.bioontology.org/bioportal/concepts/47403?conceptid=MM_CLASS_101&apikey=>YourAPIKey
>>>>>
>>>>>
>>>>> On May 9, 2012, at 9:22 AM, Rob Wynden wrote:
>>>>>
>>>>>> I think that we may be triggering an escape character on the
>>>>>> page.  Is that correct?
>>>>>> Rob
>>>>>>
>>>>>>
>>>>>> On 5/9/12 8:57 AM, Mobed, Ketty wrote:
>>>>>>> Hi Trish,
>>>>>>>
>>>>>>> here is a problem that I have run into. I have attached the
>>>>>>> Protege generated .owl file for HOM-ORTHO (BP ID# 1697). When
>>>>>>> you open up the Protege owl file and click on the left to open
>>>>>>> OrthoSurgery -> Diagnoses -> Comorbidities -> Anemia, then on
>>>>>>> the right hand side the expression for HOM-BOOL1 reads
>>>>>>> (I9CM>I9CM.2799 AND I9CM<I9CM.2860), and this is correct. Now
>>>>>>> when I upload the HOM-ORTHO.owl file to BP, then when you expand
>>>>>>> the ontology to Anemia you see that Hom Bool1 was cut-off and
>>>>>>> only reads (I9CM>I9CM.2799 AND I9CM  .
>>>>>>>
>>>>>>> Why is this? This is the SQLite syntax that we need to process
>>>>>>> our HOM translator. Any help will be appreciated.
>>>>>>>
>>>>>>> Thanks,
>>>>>>> Ketty
>>>>>>>
>>>>>>> 'It's the little things that matter'
>>>>>>>
>>>>>>> Ketty Mobed, PhD
>>>>>>> UCSF-IHPS-Informatics Lab
>>>>>>> ketty.mobed at ucsf.edu
>>>>>>> 415-352-8815
>>>>>
>>>>>
>>>
>>>
>
>
-------------- next part --------------
An HTML attachment was scrubbed...
URL: <http://mailman.stanford.edu/pipermail/bioontology-support/attachments/20120509/f1b4067c/attachment-0001.html>


More information about the bioontology-support mailing list