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[bioontology-support] [BioPortal] Feedback from Helen Parkinson

Helen Parkinson parkinson at ebi.ac.uk
Wed May 30 00:34:06 PDT 2012


Thanks Trish. Some triaging of versions of MeSH would be useful too.
Helen

On 30/05/2012 03:19, Trish Whetzel wrote:
> PS - Based on the total number of search results reported in the email, I gather you are searching against MESH Thesaurus (OWL version) [1] versus Medical Subject Headings [2]. The ontology named "Medical Subject Headings" is from UMLS, the other is a user submitted version of MeSH in the OWL format.
>
> Trish
>
> [1] http://bioportal.bioontology.org/ontologies/3019
> [2] http://bioportal.bioontology.org/ontologies/1351
>
>
>
> On May 29, 2012, at 4:13 PM, Trish Whetzel wrote:
>
>> Hi Helen,
>>
>> The current Search UI page does not display all of the parameters provided
>> by the Search Web service [1], however this is currently being updated. By
>> default, the Search Web service searches across the preferred name, term
>> identifier, and synonym properties. However, in the current UI this
>> parameter is set to search across all term properties. In the revised UI,
>> this parameter will be able to be toggled on or off.
>>
>> While the search results can not be downloaded from the Search UI currently,
>> the Search Web service can be used in clients such as GoogleDocs[2] or
>> Perl/Java clients[3] where all of the results can be reviewed in more
>> detail.
>>
>>
>> Trish
>>
>> [1]
>> http://www.bioontology.org/wiki/index.php/NCBO_REST_services#Search_services
>> [2]
>> https://docs.google.com/spreadsheet/ccc?key=0AthMJzAha3rkdHluNUVQajR4Q2hFZjhtaGNabmdMU1E#gid=1
>> [3] http://bit.ly/ncbo-sample-code
>>
>>
>>
>>
>> --
>> View this message in context: http://ncbo-support.2288202.n4.nabble.com/bioontology-support-BioPortal-Feedback-from-Helen-Parkinson-tp4650439p4650441.html
>> Sent from the NCBO Support mailing list archive at Nabble.com.
>> _______________________________________________
>> bioontology-support mailing list
>> bioontology-support at lists.stanford.edu
>> https://mailman.stanford.edu/mailman/listinfo/bioontology-support
>

-- 
Helen Parkinson, PhD
Team Leader
Functional Genomics Group
EBI

EBI 01223 494672
Skype: helen.parkinson.ebi
www.ebi.ac.uk/fgpt/



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