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[bioontology-support] Updating Rat strain ontology

Nigam, Rajni rnigam at mcw.edu
Mon Nov 5 11:11:59 PST 2012


Hi,

I did add the URL for our ftp files in the ontology location but still the files are not pulled up to your website could you please look into this and let me know if I have to do something else to facilitate this.

Regards,

Rajni

From: Nigam, Rajni
Sent: Friday, October 26, 2012 2:16 PM
To: 'Trish Whetzel'
Subject: RE: Updating Rat strain ontology

Ok Done, please let me know if it doesn't work!

Rajni

From: Trish Whetzel [mailto:whetzel at stanford.edu]
Sent: Thursday, October 25, 2012 10:51 PM
To: Nigam, Rajni
Subject: Re: Updating Rat strain ontology

Hi Rajni,

They are automatically pulled nightly from a subdirectory within "http://rgd.mcw.edu". We are also able to pull from a FTP site as well. To change this for the Rat Strain Ontology, login and go to Rat Strain Ontology summary page (http://bioportal.bioontology.org/ontologies/1150). Presumably you have Admin rights to update the ontology metadata and therefore will see a drop-down menu titled "Admin". Click on "Edit Ontology Information" and then in the section "ontology Location" select "URL" and add the URL for the FTP location that the latest version of the RS ontology is found.

Best,
Trish



On Oct 24, 2012, at 12:20 PM, Nigam, Rajni wrote:

Hi Trish,

I am looking at Clinical measurement Ontology http://bioportal.bioontology.org/ontologies/1583 Measurement Method Ontologyhttp://bioportal.bioontology.org/ontologies/1584 and Experimental Condition Ontologyhttp://bioportal.bioontology.org/ontologies/1585 that are housed and developed at RGD http://rgd.mcw.edu/ .

Could you please tell me how these ontologies are updated at NCBO? If you all directly download it from our  ftp filesftp://rgd.mcw.edu/pub/ontology/ then is it possible for you to please add Rat Strain Ontologyhttp://bioportal.bioontology.org/ontologies/1150 to that list too, as we have the latest version of it in our website.

Could you please tell me how frequently do you all take these from our website?

Thanks,


Rajni


Rajni Nigam
Scientific Curator
Rat Genome Database
(http://.rgd.mcw.edu<http://www.rgd.mcw.edu>)
Medical College of Wisconsin
8701 Watertown Plank Road
Milwaukee, WI 53226

Phone: (414) 456 7508
email: rnigam at mcw.edu<mailto:rnigam at mcw.edu>




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