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[bioontology-support] 500 error

Trish Whetzel whetzel at stanford.edu
Fri Nov 9 10:31:19 PST 2012


I believe the Hierarchy web services are the easiest method to get parent/child information for terms. 

Trish 


On Nov 9, 2012, at 10:15 AM, Sahni, Himanso * (FDA) wrote:

> Thanks
>  
> http://rest.bioontology.org/bioportal/virtual/rootpath/1422/10003890?apikey=
>  
> just worked for me.
>  
> I need to find the parent code for each medDRA concept code, Is there an easier way to accomplish this without hitting your server for every term.
>  
> Himanso
>  
> From: Trish Whetzel [mailto:whetzel at stanford.edu] 
> Sent: Friday, November 09, 2012 1:13 PM
> To: Sahni, Himanso * (FDA)
> Cc: support at bioontology.org
> Subject: Re: [bioontology-support] 500 error
>  
> Hi Himanso, 
>  
> The "rootpath" call [1] requires the parameter "conceptId", which for the term "Melanoma" in MedDRA is "10053571" and therefore the call should be formatted as:
> http://rest.bioontology.org/bioportal/virtual/rootpath/1422/10053571?apikey=YourAPIKey
>  
> However, this call returns an empty list. I'll need to check with the developers to see if the RQ relationship is also considered as a parent relationship and whether this call is expected to return "Malignant melanoma" as a parent. 
>  
> Trish 
>  
> [1] http://www.bioontology.org/wiki/index.php/NCBO_REST_services#Get_paths_to_root.2Fleaves_from_a_concept_in_the_latest_version_of_a_given_ontology
>  
>  
>  
> Trish Whetzel, PhD
> Outreach Coordinator
> The National Center for Biomedical Ontology
> Ph: 650-721-2378
> http://www.bioontology.org
>  
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>  
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>  
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>  
>  
>  
> On Nov 9, 2012, at 9:34 AM, Sahni, Himanso * (FDA) wrote:
> 
> 
> I am getting a 500 error for the following query
>  
> http://rest.bioontology.org/bioportal/virtual/rootpath/1422/Melanoma?apikey=
>  
> <errorStatus><accessedResource>/bioportal/virtual/rootpath/1422/Melanoma</accessedResource><accessDate>2012-11-09 09:33:57.308 PST</accessDate><shortMessage>Internal Server Error</shortMessage><longMessage>The server encountered an unexpected condition which prevented it from fulfilling the request</longMessage><errorCode>500</errorCode></errorStatus>
>  
> using my access key
>  
> Himanso Sahni
> Himanso.Sahni at fda.hhs.gov
> Contractor-Recombinant Data Corp.
> HSahni at recomdata.com
>  
>  
>  
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>  
>  

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