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[bioontology-support] The option 'includedefinitions' in Search services?

Trish Whetzel whetzel at stanford.edu
Fri Nov 9 14:08:28 PST 2012


Hi Dan,

Yes, the 'includedefinitions' parameter should have an effect. For example searching with the term biological process from GO
returns the term definition:
http://rest.bioontology.org/bioportal/search/?ontologyids=1070&query=biological_process&isexactmatch=true&includedefinitions=true&apikey=YourAPIKey

There appears to be a bug in returning the definition for terms in EDAM, which has been reported for the developers to investigate further.

Trish 



On Nov 8, 2012, at 5:50 PM, Dan Bolser wrote:

> Does this option have any effect? I can't see a difference here:
> 
> http://rest.bioontology.org/bioportal/search/?ontologyids=1498&query=Transcriptomics&isexactmatch=true&apikey=yes
> http://rest.bioontology.org/bioportal/search/?ontologyids=1498&query=Transcriptomics&isexactmatch=true&includedefinitions=true&apikey=yes
> http://rest.bioontology.org/bioportal/search/?ontologyids=1498&query=Transcriptomics&isexactmatch=true&includedefinitions=false&apikey=yes
> 
> As described here:
> http://www.bioontology.org/wiki/index.php/BioPortal_REST_services#Search_BioPortal
> 
> 
> Cheers,
> Dan.
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> bioontology-support mailing list
> bioontology-support at lists.stanford.edu
> https://mailman.stanford.edu/mailman/listinfo/bioontology-support



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