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[bioontology-support] Minor load issues with EFO

Ray Fergerson ray.fergerson at
Fri Aug 9 17:43:19 PDT 2013

Forwarding this to our Protégé expert, Tim. He has explained to me before
what causes this but I can't seem to remember the explanation for more
than 15 minutes. Perhaps if he documents it here I can come back to it...



-----Original Message-----
From: bioontology-support-bounces at
[mailto:bioontology-support-bounces at] On Behalf Of James
Sent: Friday, August 09, 2013 1:40 AM
To: support at Support
Subject: [bioontology-support] Minor load issues with EFO


There seems to be a bit of weirdness in the EFO hierarchy as visible in
BioPortal. At top level, two additional classes are showing 'expand
expression to' (from IAO) and 'has_scope' (from OBO in OWL) which are both
annotation properties. Not sure whey they are showing there.




European Bioinformatics Institute,
Wellcome Trust Genome Campus,
Cambridge, CB10 1SD,
United Kingdom
Tel: + 44 (0) 1223 494 676
Fax: + 44 (0) 1223 494 468

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