Search Mailing List Archives


Limit search to: Subject & Body Subject Author
Sort by: Reverse Sort
Limit to: All This Week Last Week This Month Last Month
Select Date Range     through    

[bioontology-support] Latest version of NIFSTD failed parsing in BioPortal

Ray Fergerson ray.fergerson at stanford.edu
Wed Aug 14 10:39:51 PDT 2013


Yes, we have confirmed that this was due to an out of memory issue on the
parsing server. We are going to parse it manually. Should be up in a few
days.

 

Ray

 

From: Trish Whetzel [mailto:plwhetzel at gmail.com] 
Sent: Tuesday, August 13, 2013 6:37 PM
To: Fahim Imam
Cc: Ray Fergerson; Maryann Martone; BioPortal User Support; Trish Whetzel
Subject: Re: [bioontology-support] Latest version of NIFSTD failed parsing
in BioPortal

 

Ray, 

Do you have any updates on the issue related to the failed parsing status
of NIFSTD [1]?

Trish 

[1] http://bioportal.bioontology.org/ontologies/1084

 

On Thu, Aug 8, 2013 at 9:33 PM, Fahim Imam <smtifahim at gmail.com> wrote:

Yes. The ontology is relatively bigger than the previous version.

 

Thanks,

Fahim

 

On Thu, Aug 8, 2013 at 7:39 PM, Ray Fergerson <ray.fergerson at stanford.edu>
wrote:

Trish,

My guess after a small be of investigation is that this problem appears to
be related to the size of the ontology. Has it gotten a lot bigger
recently? Our expert will be back next week. A solution will probably have
to wait until then.

Ray


-----Original Message-----
From: bioontology-support-bounces at lists.stanford.edu
[mailto:bioontology-support-bounces at lists.stanford.edu] On Behalf Of Trish
Whetzel
Sent: Thursday, August 08, 2013 11:36 AM
To: BioPortal User Support; Fahim Imam
Cc: Maryann Martone
Subject: [bioontology-support] Latest version of NIFSTD failed parsing in
BioPortal

Hello Support,

I noticed that the latest version of NIFSTD failed parsing. Do you know
how we can resolve this issue?

Thanks,
Trish



_______________________________________________
bioontology-support mailing list
bioontology-support at lists.stanford.edu
https://mailman.stanford.edu/mailman/listinfo/bioontology-support

 


_______________________________________________
bioontology-support mailing list
bioontology-support at lists.stanford.edu
https://mailman.stanford.edu/mailman/listinfo/bioontology-support

 

-------------- next part --------------
An HTML attachment was scrubbed...
URL: <http://mailman.stanford.edu/pipermail/bioontology-support/attachments/20130814/ec455b21/attachment.html>


More information about the bioontology-support mailing list