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[bioontology-support] Latest version of NIFSTD failed parsing in BioPortal

Trish Whetzel whetzel at ucsd.edu
Wed Aug 14 10:42:08 PDT 2013


Great, we'll check back at the end of the week.

Trish 



On Aug 14, 2013, at 10:39 AM, "Ray Fergerson" <ray.fergerson at stanford.edu> wrote:

> Yes, we have confirmed that this was due to an out of memory issue on the parsing server. We are going to parse it manually. Should be up in a few days.
>  
> Ray
>  
> From: Trish Whetzel [mailto:plwhetzel at gmail.com] 
> Sent: Tuesday, August 13, 2013 6:37 PM
> To: Fahim Imam
> Cc: Ray Fergerson; Maryann Martone; BioPortal User Support; Trish Whetzel
> Subject: Re: [bioontology-support] Latest version of NIFSTD failed parsing in BioPortal
>  
> Ray, 
> 
> Do you have any updates on the issue related to the failed parsing status of NIFSTD [1]?
> 
> Trish 
> 
> [1] http://bioportal.bioontology.org/ontologies/1084
>  
> 
> On Thu, Aug 8, 2013 at 9:33 PM, Fahim Imam <smtifahim at gmail.com> wrote:
> Yes. The ontology is relatively bigger than the previous version.
>  
> Thanks,
> Fahim
>  
> 
> On Thu, Aug 8, 2013 at 7:39 PM, Ray Fergerson <ray.fergerson at stanford.edu> wrote:
> Trish,
> 
> My guess after a small be of investigation is that this problem appears to
> be related to the size of the ontology. Has it gotten a lot bigger
> recently? Our expert will be back next week. A solution will probably have
> to wait until then.
> 
> Ray
> 
> -----Original Message-----
> From: bioontology-support-bounces at lists.stanford.edu
> [mailto:bioontology-support-bounces at lists.stanford.edu] On Behalf Of Trish
> Whetzel
> Sent: Thursday, August 08, 2013 11:36 AM
> To: BioPortal User Support; Fahim Imam
> Cc: Maryann Martone
> Subject: [bioontology-support] Latest version of NIFSTD failed parsing in
> BioPortal
> 
> Hello Support,
> 
> I noticed that the latest version of NIFSTD failed parsing. Do you know
> how we can resolve this issue?
> 
> Thanks,
> Trish
> 
> 
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>  
> 
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>  

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