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[bioontology-support] [Diseaseontology-discussion] [BioPortal] Human Disease Ontology Parsing Failed

Lynn Schriml lynn.schriml at gmail.com
Wed Aug 21 18:24:07 PDT 2013


Are you getting the file from diseaseontology-code. 
The SF trunk address changes with the subversion updates. 

Sent from my iPhone

On Aug 21, 2013, at 8:34 PM, Ray Fergerson <ray.fergerson at stanford.edu> wrote:

> The strange thing is that it appears to have worked before (judging by the old version). It broke in mid April. I don’t think that we have changed anything on our side.
>  
> Ray
>  
> From: Lynn Schriml [mailto:lynn.schriml at gmail.com] 
> Sent: Wednesday, August 21, 2013 3:46 PM
> To: Ray Fergerson
> Cc: support
> Subject: Re: [bioontology-support] [Diseaseontology-discussion] [BioPortal] Human Disease Ontology Parsing Failed
>  
> Thank you Ray!!
> How odd, any idea why this is happening ? 
> I've been looking at the file and haven't been able to figure this out.
> Much appreciated !!
> Lynn 
> 
> Sent from my iPhone
> 
> On Aug 21, 2013, at 6:32 PM, Ray Fergerson <ray.fergerson at stanford.edu> wrote:
> 
> Lynn,
>  
> The problem seems to be that the download link returns HTML rather than an OWL file. Perhaps it is using HTML to redirect, but this does not work. An excerpt of the text that we are seeing is given below. You can see the entire page that we retrieve if you download the ontology from the link on the bioportal page.
>  
> Ray
>  
> <!DOCTYPE html>
> <!-- Server: sfn-web-4 -->
>  
>  
>  
> <!--[if lt IE 7 ]> <html lang="en" class="no-js ie6"> <![endif]-->
> <!--[if IE 7 ]>    <html lang="en" class="no-js ie7"> <![endif]-->
> <!--[if IE 8 ]>    <html lang="en" class="no-js ie8"> <![endif]-->
> <!--[if IE 9 ]>    <html lang="en" class="no-js ie9"> <![endif]-->
> <!--[if (gt IE 9)|!(IE)]>--> <html lang="en" class="no-js"> <!--<![endif]-->
>   <head>
>     <meta content="text/html; charset=UTF-8" http-equiv="content-type"/>
>     <title>
>   Disease Ontology / Code
>     / [r2607]
> </title>
>    
> <meta id="webtracker" name="webtracker" content='{"event_id": "99b61464-09fd-11e3-a85e-0200ac1d2936", "project": "diseaseontology", "action_type": "svn"}' />
>  
>  
> From: bioontology-support-bounces at lists.stanford.edu [mailto:bioontology-support-bounces at lists.stanford.edu] On Behalf Of Lynn Schriml
> Sent: Monday, August 19, 2013 7:27 AM
> To: support
> Subject: Re: [bioontology-support] [Diseaseontology-discussion] [BioPortal] Human Disease Ontology Parsing Failed
>  
> Hello,
>    I see that the DO load has a parsing error. 
> If you can send me the error, I can fix it today.
>  
> Thank you,
> Lynn Schriml
>  
> 
> On Sat, Aug 17, 2013 at 11:37 PM, <support at bioontology.org> wrote:
> Human Disease Ontology parsing failed. 
> 
> The BioPortal team is investigating the issue. 
> 
> Please contact support at bioontology.org if you have questions. 
> 
> Thank you,
> The BioPortal Team
> ------------------------------------------------------------------------------
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> 
>  
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