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[bioontology-support] BioPortal

Ray Fergerson ray.fergerson at stanford.edu
Fri Aug 30 17:50:56 PDT 2013


Caty,

The problem is that the system has been configured to download from this
location:
http://www.bioassayontology.org/bao/

Unfortunately this now points at a directory and not an owl file. Please
update the load location in the metadata to point to an owl file.

Ray

-----Original Message-----
From: Chung, Caty [mailto:c.chung at med.miami.edu] 
Sent: Friday, August 30, 2013 8:05 AM
To: Ray Fergerson; support at bioontology.org
Cc: 'Stephan Schurer'; Saminda Abeyruwan; Visser, Ubbo E.
Subject: RE: BioPortal

Ray,

We received an email from support at bioontology.org - see below.  Can you
help me upload the new BAO ontology version into stage.bioportal?

Caty

http://bioportal.bioontology.org/ontologies/1533


---------- Forwarded message ----------
From: <support at bioontology.org>
Date: Fri, Aug 30, 2013 at 12:12 AM
Subject: [BioPortal] BioAssay Ontology Parsing Failed
To: stephan.schurer at gmail.com


BioAssay Ontology parsing failed. 

The BioPortal team is investigating the issue. 

Please contact support at bioontology.org if you have questions. 

Thank you,
________________________________________
From: Chung, Caty
Sent: Thursday, August 29, 2013 2:16 PM
To: Ray Fergerson; support at bioontology.org
Cc: 'Stephan Schurer'; Saminda Abeyruwan; Visser, Ubbo E.
Subject: BAO: BioPortal

Ray,

The test upload fails into stage.bioontology.org, using the following
file/url:  http://www.bioassayontology.org/bao/bao_complete.owl

"We're sorry but something has gone wrong. We have been notified of this
error."

Can you check and let us know,

Caty
________________________________________
From: Ray Fergerson [ray.fergerson at stanford.edu]
Sent: Tuesday, July 16, 2013 4:56 PM
To: Chung, Caty; 'Trish Whetzel'
Cc: 'Stephan Schurer'; Mader, Christopher
Subject: RE: BioPortal

You can try it out on stage.bioontology.org

Ray


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