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[bioontology-support] moving from the old Api to the new Api

Trish Whetzel plwhetzel at gmail.com
Thu Dec 19 15:09:03 PST 2013


Is the call:
http://data.bioontology.org/mappings?ontologies=NCIT,FMA&apikey=YourAPIKey
intended to return all 1,937 mappings between FMA and NCIt? Only 1 mapping
pair is returned.

On the BioPortal mappings page, after selecting NCIt the page lists a count
of 1,937 mappings, but when clicking on the link for FMA only 1 mapping
pair is displayed.

Trish



On Thu, Dec 19, 2013 at 10:00 AM, Paul R Alexander
<palexander at stanford.edu>wrote:

> Nines,
>
> We will update the documentation with mappings examples, thank you for
> pointing out that there are none.
>
> The specific call that would replace the one you were using is this:
> http://data.bioontology.org/mappings?ontologies=NCIT,FMA
>
> Paul
>
>
> On Dec 19, 2013, at 3:22 AM, Maria Angeles Sanguino Gonzalez <
> maria.sanguino at atos.net> wrote:
>
> Dear Biportal support team,
>
> I’ve receive an email suggesting moving any code that accesses the old API
> to the new API. I’m particularly interested in the mappings resources and I
> was wondering:
> -          When de new API (http://data.bioontology.org/metadata/Mapping concretely)
> will provide some examples of use.
> -          And which is the equivalent method to the old method in charge
> of provide mappings (unidirectional o bidirectional) between two ontologies
> (an example of the old method)
> o
> http://rest.bioontology.org/bioportal/virtual/mappings/ontologies?sourceontology=1032&targetontology=1053&pagesize=500&pagenum=1&apikey=8b8e7850-0dbb-43ba-b29d-b5ed5719532c
>
> Many thanks for the excellent work and thanks for the suggestion.
> Regards,
> Nines
>
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