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[bioontology-support] Javascript problem in Virtual appliance 2.0

Philippe Soares soaresp2 at gmail.com
Fri Dec 20 09:20:29 PST 2013


Hi,
I managed to upload an ontology on my virtual appliance.
When I go to the search page, I manage to get terms from that ontology, but
when I try to explore the neighborhood of that term by clicking the
"vizualize" link, I get a blank screen.

The javascript console shows a message that suggest it's trying to use the
webservices at bioportal.bioontology.org rather than the ones installed
locally in my VM, and therefore my "local" api key is refused by the remote
webservices.

Here is the output I have in the javascript console in chrome  :

ri Dec 20 12:13:06 GMT-500 2013 SEVERE: Could not retrieve full term
information for http://purl.obolibrary.org/obo/TO_0000276 Class$S1757:
Could not retrieve full term information for
http://purl.obolibrary.org/obo/TO_0000276 at Unknown.mt(0.js at 270:74) at
Unknown.OOa(0.js at 88:1025) at Unknown._.Nf(0.js at 469:949) at
Unknown._.ke(0.js at 420:673) at Unknown._.Lf(0.js at 100:673) at
Unknown._.ke(0.js at 412:673) at Unknown._.le(0.js at 374:795) at
Unknown._.Mf(0.js at 330:1204) at Unknown.Mka(0.js at 283:673) at
Unknown._.Yd(0.js at 222:229) at Unknown.eval(0.js at 131:228) at
Unknown.eval(0.js at 235:1287) at Unknown.anonymous(
http://bioportal.bioontology.org/ajax/jsonp?apikey=6700f7bc-5209-43b6-95da-…64b&path=%2Fvirtual%2Fontology%2F&callback=__gwt_jsonp__.P0.onSuccess@18:1<http://bioportal.bioontology.org/ajax/jsonp?apikey=6700f7bc-5209-43b6-95da-44336cbc0a3a&userapikey=1cfae05f-9e67-486f-820b-b393dec5764b&path=%2Fvirtual%2Fontology%2F&callback=__gwt_jsonp__.P0.onSuccess@18>)
Caused by: Class$S1757: Could not retrieve concept neighbourhood for
concept http://purl.obolibrary.org/obo/TO_0000276 in ontology at
Unknown.mt(0.js at 270:74) at Unknown.OOa(0.js at 88:1025) at
Unknown._.Nf(0.js at 469:949) at Unknown._.ke(0.js at 420:673) at
Unknown._.le(0.js at 374:795) at Unknown._.Mf(0.js at 330:1204) at
Unknown.Mka(0.js at 283:673) at Unknown._.Yd(0.js at 222:229) at
Unknown.eval(0.js at 131:228) at Unknown.eval(0.js at 235:1287) at
Unknown.anonymous(
http://bioportal.bioontology.org/ajax/jsonp?apikey=6700f7bc-5209-43b6-95da-…64b&path=%2Fvirtual%2Fontology%2F&callback=__gwt_jsonp__.P0.onSuccess@18:1<http://bioportal.bioontology.org/ajax/jsonp?apikey=6700f7bc-5209-43b6-95da-44336cbc0a3a&userapikey=1cfae05f-9e67-486f-820b-b393dec5764b&path=%2Fvirtual%2Fontology%2F&callback=__gwt_jsonp__.P0.onSuccess@18>)
Caused by: Class$S1397: failed to transform '{"status":403,
"body":"{\"errorStatus\":{\"accessedResource\":\"\\/bioportal\\/virtual\\/ontology\\/\",\"accessDate\":\"2013-12-20
09:13:04.808 PST\",\"shortMessage\":\"Forbidden\",\"longMessage\":\"Invalid
credentials supplied: apiKey = 1cfae05f-9e67-486f-820b-b393dec5764b. Please
visit http:\\/\\/bioportal.bioontology.org\\/account to get your API
key.\",\"errorCode\":403}}"}' at Unknown.mt(0.js at 270:74) at
Unknown.kLa(0.js at 179:795) at Unknown._.le(0.js at 377:795) at
Unknown._.Mf(0.js at 330:1204) at Unknown.Mka(0.js at 283:673) at
Unknown._.Yd(0.js at 222:229) at Unknown.eval(0.js at 131:228) at
Unknown.eval(0.js at 235:1287) at Unknown.anonymous(
http://bioportal.bioontology.org/ajax/jsonp?apikey=6700f7bc-5209-43b6-95da-…64b&path=%2Fvirtual%2Fontology%2F&callback=__gwt_jsonp__.P0.onSuccess@18:1<http://bioportal.bioontology.org/ajax/jsonp?apikey=6700f7bc-5209-43b6-95da-44336cbc0a3a&userapikey=1cfae05f-9e67-486f-820b-b393dec5764b&path=%2Fvirtual%2Fontology%2F&callback=__gwt_jsonp__.P0.onSuccess@18>
)
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