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[bioontology-support] Javascript problem in Virtual appliance 2.0

Paul R Alexander palexander at stanford.edu
Fri Dec 20 09:53:04 PST 2013


Philippe,

The visualizations on the Appliance will not be working until a subsequent release. Sorry for the inconvenience.

Paul


On Dec 20, 2013, at 9:20 AM, Philippe Soares <soaresp2 at gmail.com> wrote:

> Hi,
> I managed to upload an ontology on my virtual appliance.
> When I go to the search page, I manage to get terms from that ontology, but when I try to explore the neighborhood of that term by clicking the "vizualize" link, I get a blank screen.
> 
> The javascript console shows a message that suggest it's trying to use the webservices at bioportal.bioontology.org rather than the ones installed locally in my VM, and therefore my "local" api key is refused by the remote webservices.
> 
> Here is the output I have in the javascript console in chrome  : 
> 
> ri Dec 20 12:13:06 GMT-500 2013 
> SEVERE: Could not retrieve full term information for http://purl.obolibrary.org/obo/TO_0000276
> Class$S1757: Could not retrieve full term information for http://purl.obolibrary.org/obo/TO_0000276
> 	at Unknown.mt(0.js at 270:74)
> 	at Unknown.OOa(0.js at 88:1025)
> 	at Unknown._.Nf(0.js at 469:949)
> 	at Unknown._.ke(0.js at 420:673)
> 	at Unknown._.Lf(0.js at 100:673)
> 	at Unknown._.ke(0.js at 412:673)
> 	at Unknown._.le(0.js at 374:795)
> 	at Unknown._.Mf(0.js at 330:1204)
> 	at Unknown.Mka(0.js at 283:673)
> 	at Unknown._.Yd(0.js at 222:229)
> 	at Unknown.eval(0.js at 131:228)
> 	at Unknown.eval(0.js at 235:1287)
> 	at Unknown.anonymous(http://bioportal.bioontology.org/ajax/jsonp?apikey=6700f7bc-5209-43b6-95da-…64b&path=%2Fvirtual%2Fontology%2F&callback=__gwt_jsonp__.P0.onSuccess@18:1)
> Caused by: Class$S1757: Could not retrieve concept neighbourhood for concept http://purl.obolibrary.org/obo/TO_0000276 in ontology 
> 	at Unknown.mt(0.js at 270:74)
> 	at Unknown.OOa(0.js at 88:1025)
> 	at Unknown._.Nf(0.js at 469:949)
> 	at Unknown._.ke(0.js at 420:673)
> 	at Unknown._.le(0.js at 374:795)
> 	at Unknown._.Mf(0.js at 330:1204)
> 	at Unknown.Mka(0.js at 283:673)
> 	at Unknown._.Yd(0.js at 222:229)
> 	at Unknown.eval(0.js at 131:228)
> 	at Unknown.eval(0.js at 235:1287)
> 	at Unknown.anonymous(http://bioportal.bioontology.org/ajax/jsonp?apikey=6700f7bc-5209-43b6-95da-…64b&path=%2Fvirtual%2Fontology%2F&callback=__gwt_jsonp__.P0.onSuccess@18:1)
> Caused by: Class$S1397: failed to transform '{"status":403, "body":"{\"errorStatus\":{\"accessedResource\":\"\\/bioportal\\/virtual\\/ontology\\/\",\"accessDate\":\"2013-12-20 09:13:04.808 PST\",\"shortMessage\":\"Forbidden\",\"longMessage\":\"Invalid credentials supplied: apiKey = 1cfae05f-9e67-486f-820b-b393dec5764b. Please visit http:\\/\\/bioportal.bioontology.org\\/account to get your API key.\",\"errorCode\":403}}"}'
> 	at Unknown.mt(0.js at 270:74)
> 	at Unknown.kLa(0.js at 179:795)
> 	at Unknown._.le(0.js at 377:795)
> 	at Unknown._.Mf(0.js at 330:1204)
> 	at Unknown.Mka(0.js at 283:673)
> 	at Unknown._.Yd(0.js at 222:229)
> 	at Unknown.eval(0.js at 131:228)
> 	at Unknown.eval(0.js at 235:1287)
> 	at Unknown.anonymous(http://bioportal.bioontology.org/ajax/jsonp?apikey=6700f7bc-5209-43b6-95da-…64b&path=%2Fvirtual%2Fontology%2F&callback=__gwt_jsonp__.P0.onSuccess@18:1)
> _______________________________________________
> bioontology-support mailing list
> bioontology-support at lists.stanford.edu
> https://mailman.stanford.edu/mailman/listinfo/bioontology-support

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