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[bioontology-support] moving from the old Api to the new Api

Paul R Alexander palexander at stanford.edu
Fri Dec 20 09:53:27 PST 2013


This is a bug. We’ll be looking into it. Thanks for reporting.

Paul


On Dec 19, 2013, at 3:09 PM, Trish Whetzel <plwhetzel at gmail.com> wrote:

> Is the call:  http://data.bioontology.org/mappings?ontologies=NCIT,FMA&apikey=YourAPIKey  intended to return all 1,937 mappings between FMA and NCIt? Only 1 mapping pair is returned. 
> 
> On the BioPortal mappings page, after selecting NCIt the page lists a count of 1,937 mappings, but when clicking on the link for FMA only 1 mapping pair is displayed.
> 
> Trish 
> 
> 
> 
> On Thu, Dec 19, 2013 at 10:00 AM, Paul R Alexander <palexander at stanford.edu> wrote:
> Nines,
> 
> We will update the documentation with mappings examples, thank you for pointing out that there are none.
> 
> The specific call that would replace the one you were using is this:
> http://data.bioontology.org/mappings?ontologies=NCIT,FMA
> 
> Paul
> 
> 
> On Dec 19, 2013, at 3:22 AM, Maria Angeles Sanguino Gonzalez <maria.sanguino at atos.net> wrote:
> 
>> Dear Biportal support team,
>>  
>> I’ve receive an email suggesting moving any code that accesses the old API to the new API. I’m particularly interested in the mappings resources and I was wondering:
>> -          When de new API (http://data.bioontology.org/metadata/Mapping concretely) will provide some examples of use.
>> -          And which is the equivalent method to the old method in charge of provide mappings (unidirectional o bidirectional) between two ontologies (an example of the old method)
>> o   http://rest.bioontology.org/bioportal/virtual/mappings/ontologies?sourceontology=1032&targetontology=1053&pagesize=500&pagenum=1&apikey=8b8e7850-0dbb-43ba-b29d-b5ed5719532c
>>  
>> Many thanks for the excellent work and thanks for the suggestion.
>> Regards,
>> Nines
>>  
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