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[bioontology-support] ontology metadata

Trish Whetzel whetzel at stanford.edu
Mon Jan 28 15:08:11 PST 2013


In that case I think you need to modify the ontology metadata through Protege either to remove the name or add your account as an admin of the ontology and then make the changes through the BioPortal Web interface using the "Admin" select menu to "Edit" the ontology metadata. 

Trish 


On Jan 28, 2013, at 1:52 PM, Pouchard, Line Catherine wrote:

> I don’t have these credentials as a student performed the work and uploaded these ontologies under my direction.
>  
> Any other option?
> Line
>  
> From: Trish Whetzel [mailto:whetzel at stanford.edu] 
> Sent: Monday, January 28, 2013 4:47 PM
> To: Pouchard, Line Catherine
> Cc: support at bioontology.org; Huhns, Michael (huhns at cec.sc.edu); Thompson, Belynda N.
> Subject: Re: [bioontology-support] ontology metadata
>  
> Ok, in that case for each ontology you would like to modify the "Contact" information you can click on the ontology name on the Browse page to get to the Ontology Summary page and presumably you will have admin rights to the ontology and can use the "Administer" menu to "Edit Ontology Information" .. actually ontology metadata information including the contact name that is displayed on the Browse page and Ontology Summary page. There might also be a way to update this information from the database if you need to make a lot of updates and prefer to do this via a script.
>  
> Trish 
>  
>  
>  
> On Jan 28, 2013, at 1:27 PM, Pouchard, Line Catherine wrote:
> 
> 
> The browse page, attached.  I don’t want people’s names to appear.
>  
> Line
>  
> From: Trish Whetzel [mailto:whetzel at stanford.edu] 
> Sent: Monday, January 28, 2013 4:28 PM
> To: Pouchard, Line Catherine
> Cc: support at bioontology.org; Huhns, Michael (huhns at cec.sc.edu)
> Subject: Re: [bioontology-support] ontology metadata
>  
> What page do you want to take a screenshot of .. the ontology summary page such as:
> http://bioportal.bioontology.org/ontologies/1104
>  
> Trish 
>  
>  
> On Jan 28, 2013, at 1:19 PM, Pouchard, Line Catherine wrote:
> 
> 
> 
> HI Trish:
>  
> Actually no.  I want to remove the ontology owner for some ontologies that I had uploaded myself and put people’s names in it.  I want to take a screenshot for a publication and would prefer not to have people’s names.
>  
> Line
>  
> From: Trish Whetzel [mailto:whetzel at stanford.edu] 
> Sent: Monday, January 28, 2013 4:21 PM
> To: Pouchard, Line Catherine
> Cc: support at bioontology.org; Huhns, Michael (huhns at cec.sc.edu)
> Subject: Re: [bioontology-support] ontology metadata
>  
> Hi Line, 
>  
> To check, by update ontology metadata I gather you mean add new categories or groups or add a user as an admin of an ontology? If yes, then this can be done by working with the BioPortal Metadata ontology directly through Protege. Information on how to add or change categories, is provided here: http://www.bioontology.org/wiki/index.php/Virtual_Appliance_FAQ#How_do_I_add_or_change_categories.3F
>  
> Trish 
>  
>  
> On Jan 28, 2013, at 1:11 PM, Pouchard, Line Catherine wrote:
> 
> 
> 
> 
> Dear all:
>  
> I would like to update ontology metadata in the ESIP portal deployed on EC2.  I do have access to the bioportal_admin module but the tabs for Update ontology metadata & Reassign Ontology owner are shaded out.  How can I perform this task?
>  
> Thanks
> Line
>  
> Line C. Pouchard
> Scientific Data Group
> Computer Science and Mathematics
> DataONE Integration and Semantics WG
> Oak Ridge National Laboratory
> 1 Bethel Valley Road
> Oak Ridge, TN 37831-6367
> 865-574-6125
> linepouchard at gmail.com
> http://www.csm.ornl.gov/~7lp
>  
> _______________________________________________
> bioontology-support mailing list
> bioontology-support at lists.stanford.edu
> https://mailman.stanford.edu/mailman/listinfo/bioontology-support
>  
>  
> <browse.png>
>  

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