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[bioontology-support] [BioPortal] Feedback from Midori Harris

Dr Midori A. Harris mah79 at cam.ac.uk
Thu Jul 25 03:21:38 PDT 2013


Dear Ray,

Thanks very much - that does work for getting the Visualization tab.

Just one quick follow-up: is the "path to root" view the default (it's 
what we'd like to show).

Midori

On Wed, 24 Jul 2013, Ray Fergerson wrote:

> You can get this result but not in the obvious way. Instead of
> "#visualization" append a parameter "t=visualization" to the URL. Thus:
>
> http://bioportal.bioontology.org/ontologies/1689?p=terms&conceptid=http%3A
> %2F%2Fpurl.obolibrary.org%2Fobo%2FFYPO:0000025&t=visualization
>
> Should give you what you want.
>
> Ray
>
> -----Original Message-----
> From: bioontology-support-bounces at lists.stanford.edu
> [mailto:bioontology-support-bounces at lists.stanford.edu] On Behalf Of
> support at bioontology.org
> Sent: Wednesday, July 24, 2013 5:21 AM
> To: support at bioontology.org; mah79 at cam.ac.uk
> Subject: [bioontology-support] [BioPortal] Feedback from Midori Harris
>
>
> Name: Midori Harris
>
> Email: mah79 at cam.ac.uk
>
> Location:
> http://bioportal.bioontology.org/ontologies/1689?p=terms&conceptid=http://
> purl.obolibrary.org/obo/FYPO:0000025
>
> Comment:
> Hello,
>
> Is there a way to link directly to the Visualization "path to root" view
> for an ontology term? We'd like to do so for FYPO terms in Canto (online
> curation tool - curation.pombase.org), but URLs such as this
>
> http://bioportal.bioontology.org/ontologies/1689?p=terms&conceptid=http%3A
> %2F%2Fpurl.obolibrary.org%2Fobo%2FFYPO:0000025#visualization
>
> ... open with the Details tab displayed. It also isn't clear whether it's
> possible to specify that we want to show the "path to root" view (although
> that's what I get by default when I click on the Visualization tab -- if
> it is indeed the default, that will do if there's a way to link directly
> to the Visualization tab at all).
>
> Thanks,
> Midori
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