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[bioontology-support] [BioPortal] Feedback from Midori Harris

Ray Fergerson ray.fergerson at stanford.edu
Thu Jul 25 10:53:21 PDT 2013


Path to root is the default. That is fortunate for you because we don't
really have a mechanism for programmatically choosing one of the
non-default visualizations.

Ray 

-----Original Message-----
From: Dr Midori A. harris [mailto:mah79 at hermes.cam.ac.uk] On Behalf Of Dr
Midori A. Harris
Sent: Thursday, July 25, 2013 3:22 AM
To: Ray Fergerson
Cc: support at bioontology.org
Subject: RE: [bioontology-support] [BioPortal] Feedback from Midori Harris

Dear Ray,

Thanks very much - that does work for getting the Visualization tab.

Just one quick follow-up: is the "path to root" view the default (it's
what we'd like to show).

Midori

On Wed, 24 Jul 2013, Ray Fergerson wrote:

> You can get this result but not in the obvious way. Instead of 
> "#visualization" append a parameter "t=visualization" to the URL. Thus:
>
> http://bioportal.bioontology.org/ontologies/1689?p=terms&conceptid=htt
> p%3A %2F%2Fpurl.obolibrary.org%2Fobo%2FFYPO:0000025&t=visualization
>
> Should give you what you want.
>
> Ray
>
> -----Original Message-----
> From: bioontology-support-bounces at lists.stanford.edu
> [mailto:bioontology-support-bounces at lists.stanford.edu] On Behalf Of 
> support at bioontology.org
> Sent: Wednesday, July 24, 2013 5:21 AM
> To: support at bioontology.org; mah79 at cam.ac.uk
> Subject: [bioontology-support] [BioPortal] Feedback from Midori Harris
>
>
> Name: Midori Harris
>
> Email: mah79 at cam.ac.uk
>
> Location:
> http://bioportal.bioontology.org/ontologies/1689?p=terms&conceptid=htt
> p://
> purl.obolibrary.org/obo/FYPO:0000025
>
> Comment:
> Hello,
>
> Is there a way to link directly to the Visualization "path to root" 
> view for an ontology term? We'd like to do so for FYPO terms in Canto 
> (online curation tool - curation.pombase.org), but URLs such as this
>
> http://bioportal.bioontology.org/ontologies/1689?p=terms&conceptid=htt
> p%3A %2F%2Fpurl.obolibrary.org%2Fobo%2FFYPO:0000025#visualization
>
> ... open with the Details tab displayed. It also isn't clear whether 
> it's possible to specify that we want to show the "path to root" view 
> (although that's what I get by default when I click on the 
> Visualization tab -- if it is indeed the default, that will do if 
> there's a way to link directly to the Visualization tab at all).
>
> Thanks,
> Midori
> _______________________________________________
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> bioontology-support at lists.stanford.edu
> https://mailman.stanford.edu/mailman/listinfo/bioontology-support
>


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