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[bioontology-support] [BioPortal] Feedback from Midori Harris

Dr Midori A. Harris mah79 at cam.ac.uk
Thu Jul 25 11:00:41 PDT 2013


Thanks for confirming that -- it should be fine as is with path toroot as 
default.

Midori

On Thu, 25 Jul 2013, Ray Fergerson wrote:

> Path to root is the default. That is fortunate for you because we don't
> really have a mechanism for programmatically choosing one of the
> non-default visualizations.
>
> Ray
>
> -----Original Message-----
> From: Dr Midori A. harris [mailto:mah79 at hermes.cam.ac.uk] On Behalf Of Dr
> Midori A. Harris
> Sent: Thursday, July 25, 2013 3:22 AM
> To: Ray Fergerson
> Cc: support at bioontology.org
> Subject: RE: [bioontology-support] [BioPortal] Feedback from Midori Harris
>
> Dear Ray,
>
> Thanks very much - that does work for getting the Visualization tab.
>
> Just one quick follow-up: is the "path to root" view the default (it's
> what we'd like to show).
>
> Midori
>
> On Wed, 24 Jul 2013, Ray Fergerson wrote:
>
>> You can get this result but not in the obvious way. Instead of
>> "#visualization" append a parameter "t=visualization" to the URL. Thus:
>>
>> http://bioportal.bioontology.org/ontologies/1689?p=terms&conceptid=htt
>> p%3A %2F%2Fpurl.obolibrary.org%2Fobo%2FFYPO:0000025&t=visualization
>>
>> Should give you what you want.
>>
>> Ray
>>
>> -----Original Message-----
>> From: bioontology-support-bounces at lists.stanford.edu
>> [mailto:bioontology-support-bounces at lists.stanford.edu] On Behalf Of
>> support at bioontology.org
>> Sent: Wednesday, July 24, 2013 5:21 AM
>> To: support at bioontology.org; mah79 at cam.ac.uk
>> Subject: [bioontology-support] [BioPortal] Feedback from Midori Harris
>>
>>
>> Name: Midori Harris
>>
>> Email: mah79 at cam.ac.uk
>>
>> Location:
>> http://bioportal.bioontology.org/ontologies/1689?p=terms&conceptid=htt
>> p://
>> purl.obolibrary.org/obo/FYPO:0000025
>>
>> Comment:
>> Hello,
>>
>> Is there a way to link directly to the Visualization "path to root"
>> view for an ontology term? We'd like to do so for FYPO terms in Canto
>> (online curation tool - curation.pombase.org), but URLs such as this
>>
>> http://bioportal.bioontology.org/ontologies/1689?p=terms&conceptid=htt
>> p%3A %2F%2Fpurl.obolibrary.org%2Fobo%2FFYPO:0000025#visualization
>>
>> ... open with the Details tab displayed. It also isn't clear whether
>> it's possible to specify that we want to show the "path to root" view
>> (although that's what I get by default when I click on the
>> Visualization tab -- if it is indeed the default, that will do if
>> there's a way to link directly to the Visualization tab at all).
>>
>> Thanks,
>> Midori
>> _______________________________________________
>> bioontology-support mailing list
>> bioontology-support at lists.stanford.edu
>> https://mailman.stanford.edu/mailman/listinfo/bioontology-support
>>
>


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