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[bioontology-support] FW: NCBO Virtual Appliance

Rekapalli, Hari Hari.Rekapalli at
Thu Jun 27 17:20:11 PDT 2013

Hi Ray,
Thanks for the info. What's considered large? I have about 30,000 patient discharge summary text records.

From: Ray Fergerson [ray.fergerson at]
Sent: Thursday, June 27, 2013 5:15 PM
To: Rekapalli, Hari; support at
Subject: RE: [bioontology-support] FW: NCBO Virtual Appliance


You can use the REST access to the production version of the annotator for this as well. Instructions are available here:

You can also do this sort of access with the VM as well (particularly if you have large data sets to process) but try out the production REST service first. If you need the VM then please contact me off list and we can get you set up.


From: bioontology-support-bounces at [mailto:bioontology-support-bounces at] On Behalf Of Rekapalli, Hari
Sent: Thursday, June 27, 2013 4:59 PM
To: support at
Subject: [bioontology-support] FW: NCBO Virtual Appliance

From: Rekapalli, Hari
Sent: Thursday, June 27, 2013 4:56 PM
To: whetzel at<mailto:whetzel at>
Subject: NCBO Virtual Appliance
Hi Trish,
This is Hari Rekapalli, from UCSF. We met at the Hackathon a few months ago, hope you remember. I have a question for you. What's the best way to make use of the Annotator tool? I presume that you are no longer supporting the download version of it, and that you now have it rolled up into the Virtual Appliance. If this is the case, could you please let me know how do I go about downloading it? My username is 'rvharikrishna'. Once I have the appliance, I can run the REST queries locally with the source text as a param to get the SNOMED concepts as an output, right? Because that's what I am trying to do.

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