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[bioontology-support] FW: NCBO Virtual Appliance

Rekapalli, Hari Hari.Rekapalli at ucsf.edu
Thu Jun 27 17:20:11 PDT 2013


Hi Ray,
Thanks for the info. What's considered large? I have about 30,000 patient discharge summary text records.

Best,
Hari
________________________________
From: Ray Fergerson [ray.fergerson at stanford.edu]
Sent: Thursday, June 27, 2013 5:15 PM
To: Rekapalli, Hari; support at bioontology.org
Subject: RE: [bioontology-support] FW: NCBO Virtual Appliance

Hari,

You can use the REST access to the production version of the annotator for this as well. Instructions are available here:
http://www.bioontology.org/wiki/index.php/Annotator_User_Guide

You can also do this sort of access with the VM as well (particularly if you have large data sets to process) but try out the production REST service first. If you need the VM then please contact me off list and we can get you set up.

Ray

From: bioontology-support-bounces at lists.stanford.edu [mailto:bioontology-support-bounces at lists.stanford.edu] On Behalf Of Rekapalli, Hari
Sent: Thursday, June 27, 2013 4:59 PM
To: support at bioontology.org
Subject: [bioontology-support] FW: NCBO Virtual Appliance


________________________________
From: Rekapalli, Hari
Sent: Thursday, June 27, 2013 4:56 PM
To: whetzel at stanford.edu<mailto:whetzel at stanford.edu>
Subject: NCBO Virtual Appliance
Hi Trish,
This is Hari Rekapalli, from UCSF. We met at the Hackathon a few months ago, hope you remember. I have a question for you. What's the best way to make use of the Annotator tool? I presume that you are no longer supporting the download version of it, and that you now have it rolled up into the Virtual Appliance. If this is the case, could you please let me know how do I go about downloading it? My username is 'rvharikrishna'. Once I have the appliance, I can run the REST queries locally with the source text as a param to get the SNOMED concepts as an output, right? Because that's what I am trying to do.

Thanks,
Hari
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