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[bioontology-support] error in R annotator client

Andrew Su asu at scripps.edu
Tue Mar 19 07:28:41 PDT 2013


the reset password link on bioportal doesn't appear to be working, so
I can't get my API key.  Help please?

-andrew

On Mon, Mar 18, 2013 at 5:46 PM, Trish Whetzel <whetzel at stanford.edu> wrote:
> Hi Katie,
>
> I have not seen this error reported previously. The Annotator R Client was
> developed by Andrew Su,now included in this thread, and may be able to
> provide more insight on this error.
>
> Best,
> Trish
>
>
> Trish Whetzel, PhD
> Outreach Coordinator
> The National Center for Biomedical Ontology
> Ph: 650-721-2378
> http://www.bioontology.org
>
> "Like" NCBO on Facebook: http://on.fb.me/bioontology
>
> Follow NCBO on Twitter: http://twitter.com/#!/bioontology
>
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>
>
> On Mar 18, 2013, at 6:28 AM, Katie Planey wrote:
>
> Dear NCBO support,
>
> I'm getting errors from the NCBO annotator R client running the simple
> example given on the wiki page (I did input my own API key):
>
> http://www.bioontology.org/wiki/index.php/Annotator_R_Client
>
>
> It looks like
>
>  for( result in resultNodes ) {
>     localConceptId <-
> xmlValue(getNodeSet(resultNodes,"./term/localConceptId")[[1]])
>     print( paste( "ID = ", localConceptId ) )
>
> is causing error because the xmlValue() here returns a length of zero. Has
> anyone else ever reported this error?
>
>
> ___
> Katie Planey, MBA
> Stanford Biomedical Informatics
> Butte Lab | http://buttelab.stanford.edu/
>
>
>
>
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> https://mailman.stanford.edu/mailman/listinfo/bioontology-support
>
>
>


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