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[bioontology-support] error in R annotator client

Andrew Su asu at scripps.edu
Tue Mar 19 07:29:42 PDT 2013


Aaack, nevermind.  Just got the reset link...  Will reply to Katie
(and all) later today...

-andrew

On Tue, Mar 19, 2013 at 7:28 AM, Andrew Su <asu at scripps.edu> wrote:
> the reset password link on bioportal doesn't appear to be working, so
> I can't get my API key.  Help please?
>
> -andrew
>
> On Mon, Mar 18, 2013 at 5:46 PM, Trish Whetzel <whetzel at stanford.edu> wrote:
>> Hi Katie,
>>
>> I have not seen this error reported previously. The Annotator R Client was
>> developed by Andrew Su,now included in this thread, and may be able to
>> provide more insight on this error.
>>
>> Best,
>> Trish
>>
>>
>> Trish Whetzel, PhD
>> Outreach Coordinator
>> The National Center for Biomedical Ontology
>> Ph: 650-721-2378
>> http://www.bioontology.org
>>
>> "Like" NCBO on Facebook: http://on.fb.me/bioontology
>>
>> Follow NCBO on Twitter: http://twitter.com/#!/bioontology
>>
>> Join in Discussions on LinkedIn: http://linkd.in/ncbo-group
>>
>>
>> On Mar 18, 2013, at 6:28 AM, Katie Planey wrote:
>>
>> Dear NCBO support,
>>
>> I'm getting errors from the NCBO annotator R client running the simple
>> example given on the wiki page (I did input my own API key):
>>
>> http://www.bioontology.org/wiki/index.php/Annotator_R_Client
>>
>>
>> It looks like
>>
>>  for( result in resultNodes ) {
>>     localConceptId <-
>> xmlValue(getNodeSet(resultNodes,"./term/localConceptId")[[1]])
>>     print( paste( "ID = ", localConceptId ) )
>>
>> is causing error because the xmlValue() here returns a length of zero. Has
>> anyone else ever reported this error?
>>
>>
>> ___
>> Katie Planey, MBA
>> Stanford Biomedical Informatics
>> Butte Lab | http://buttelab.stanford.edu/
>>
>>
>>
>>
>> _______________________________________________
>> bioontology-support mailing list
>> bioontology-support at lists.stanford.edu
>> https://mailman.stanford.edu/mailman/listinfo/bioontology-support
>>
>>
>>


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