Search Mailing List Archives


Limit search to: Subject & Body Subject Author
Sort by: Reverse Sort
Limit to: All This Week Last Week This Month Last Month
Select Date Range     through    

[bioontology-support] [BioPortal] Feedback from cooperl

Trish Whetzel whetzel at stanford.edu
Tue May 21 13:21:44 PDT 2013


Hi Lol, 

This looks like a bug based on the OBO stanza:

[Term]
id: PO:0008030
name: trichome cell
namespace: plant_anatomy
def: "A plant cell that is part of a trichome." [POC:curators]
comment: A branch of a unicellular trichome is a GO sub-cellular component.
subset: CL
synonym: "c&#233lula del tricoma (Spanish)" EXACT Spanish [POC:Maria_Alejandra_Gandolfo]
synonym: "non-glandular unicellular trichome" NARROW []
synonym: "non-secretory unicellular trichome" NARROW []
synonym: "simple trichome" NARROW [PMID:19939948]
synonym: "unicellular trichome" NARROW []
synonym: "毛(毛茸、糸状体)細胞 (Japanese)" EXACT Japanese [NIG:Yukiko_Yamazaki]
is_a: PO:0009002 ! plant cell
relationship: develops_from PO:0004013 ! epidermal cell
relationship: part_of PO:0000282 ! trichome

I'll submit a bug report on this. Also, note that it appears the "Get Term" web service call is also returning this incorrect is_a relationship:
http://rest.bioontology.org/bioportal/concepts/49609?conceptid=PO%3A0008030&apikey=YourAPIKey

Trish 


On May 20, 2013, at 10:11 AM, support at bioontology.org wrote:

> 
> Name: cooperl
> 
> Email: cooperl at science.oregonstate.edu
> 
> Location: http://bioportal.bioontology.org/ontologies/49609?p=terms
> 
> Comment:
> There seems to be some thing odd going on with the visualization tool.  It seems that some or all of the part_of relations are being displayed as is_a.  
> http://bioportal.bioontology.org/ontologies/49609/?p=terms&conceptid=PO%3A0008030
> "trichome cell" should be part_of "trichome", not is_a.  
> Also, example from GO: root hair tip is part_of root hair, not is_a root hair.
> http://bioportal.bioontology.org/ontologies/50270?p=terms&conceptid=GO%3A0035619&jump_to_nav=true#visualization
> 
> Thanks Laurel
> _______________________________________________
> bioontology-support mailing list
> bioontology-support at lists.stanford.edu
> https://mailman.stanford.edu/mailman/listinfo/bioontology-support



More information about the bioontology-support mailing list