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[bioontology-support] [BioPortal] Feedback from cooperl
cooperl at science.orgonstate.edu
Tue May 21 14:22:59 PDT 2013
Yes, I think it is. Also it shows up correctly in the the Bioportal tree view
Or do you mean there is an error in the stanza?
Sent from my iPad
On May 21, 2013, at 1:21 PM, Trish Whetzel <whetzel at stanford.edu> wrote:
> Hi Lol,
> This looks like a bug based on the OBO stanza:
> id: PO:0008030
> name: trichome cell
> namespace: plant_anatomy
> def: "A plant cell that is part of a trichome." [POC:curators]
> comment: A branch of a unicellular trichome is a GO sub-cellular component.
> subset: CL
> synonym: "célula del tricoma (Spanish)" EXACT Spanish [POC:Maria_Alejandra_Gandolfo]
> synonym: "non-glandular unicellular trichome" NARROW 
> synonym: "non-secretory unicellular trichome" NARROW 
> synonym: "simple trichome" NARROW [PMID:19939948]
> synonym: "unicellular trichome" NARROW 
> synonym: "ÊØõÔºàÊØõËå∏„ÄÅÁ≥∏Áä∂‰ΩìÔºâÁ¥∞ËÉû (Japanese)" EXACT Japanese [NIG:Yukiko_Yamazaki]
> is_a: PO:0009002 ! plant cell
> relationship: develops_from PO:0004013 ! epidermal cell
> relationship: part_of PO:0000282 ! trichome
> I'll submit a bug report on this. Also, note that it appears the "Get Term" web service call is also returning this incorrect is_a relationship:
> On May 20, 2013, at 10:11 AM, support at bioontology.org wrote:
>> Name: cooperl
>> Email: cooperl at science.oregonstate.edu
>> Location: http://bioportal.bioontology.org/ontologies/49609?p=terms
>> There seems to be some thing odd going on with the visualization tool. It seems that some or all of the part_of relations are being displayed as is_a.
>> "trichome cell" should be part_of "trichome", not is_a.
>> Also, example from GO: root hair tip is part_of root hair, not is_a root hair.
>> Thanks Laurel
>> bioontology-support mailing list
>> bioontology-support at lists.stanford.edu
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