Search Mailing List Archives

Limit search to: Subject & Body Subject Author
Sort by: Reverse Sort
Limit to: All This Week Last Week This Month Last Month
Select Date Range     through    

[bioontology-support] [BioPortal] Feedback from cooperl

Laurel Cooper cooperl at
Tue May 21 14:22:59 PDT 2013

Yes, I think it is.  Also it shows up correctly in the the Bioportal tree view
Or do you mean there is an error in the stanza?

Sent from my iPad

On May 21, 2013, at 1:21 PM, Trish Whetzel <whetzel at> wrote:

> Hi Lol, 
> This looks like a bug based on the OBO stanza:
> [Term]
> id: PO:0008030
> name: trichome cell
> namespace: plant_anatomy
> def: "A plant cell that is part of a trichome." [POC:curators]
> comment: A branch of a unicellular trichome is a GO sub-cellular component.
> subset: CL
> synonym: "c&#233lula del tricoma (Spanish)" EXACT Spanish [POC:Maria_Alejandra_Gandolfo]
> synonym: "non-glandular unicellular trichome" NARROW []
> synonym: "non-secretory unicellular trichome" NARROW []
> synonym: "simple trichome" NARROW [PMID:19939948]
> synonym: "unicellular trichome" NARROW []
> synonym: "毛(毛茸、糸状体)細胞 (Japanese)" EXACT Japanese [NIG:Yukiko_Yamazaki]
> is_a: PO:0009002 ! plant cell
> relationship: develops_from PO:0004013 ! epidermal cell
> relationship: part_of PO:0000282 ! trichome
> I'll submit a bug report on this. Also, note that it appears the "Get Term" web service call is also returning this incorrect is_a relationship:
> Trish 
> On May 20, 2013, at 10:11 AM, support at wrote:
>> Name: cooperl
>> Email: cooperl at
>> Location:
>> Comment:
>> There seems to be some thing odd going on with the visualization tool.  It seems that some or all of the part_of relations are being displayed as is_a.  
>> "trichome cell" should be part_of "trichome", not is_a.  
>> Also, example from GO: root hair tip is part_of root hair, not is_a root hair.
>> Thanks Laurel
>> _______________________________________________
>> bioontology-support mailing list
>> bioontology-support at

More information about the bioontology-support mailing list