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[bioontology-support] manual loading of OWL and OBO files

Paul R Alexander palexander at stanford.edu
Fri Nov 1 15:23:38 PDT 2013


You can use the web-based UI included on the appliance to manually load ontologies. There is no support for loading ontologies from a script.

Are you wanting to get an API Key for BioPortal or for your Appliance?

Paul


On Nov 1, 2013, at 3:21 PM, La Rota, Mauricio <MAURICIO.LAROTA at PIONEER.COM> wrote:

> Sorry about what may be ignorance, but how do we manually load ontologies (OBO and OWL) into the appliance?  Is there a script to load such files?
> 
> The FAQ at http://www.bioontology.org/wiki/index.php/Virtual_Appliance_FAQ 
> ...does not exactly explain .  It says to use a "Version ID" with the "Parse Ontologies" tool, which may be fine with ontologies downloaded from the ncbo site, but how to do it with our own OBO formatted files?
> 
> Also, I could not find a good explanation on how to obtain an API key. 
> 
> Thanks,
> 
> Mauricio.
> 
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