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[bioontology-support] Access MP_HEALTH_TOPIC_URL value through REST API

Paul R Alexander palexander at stanford.edu
Fri Nov 1 19:56:30 PDT 2013


Neal,

You can use the following to get properties for FMA, which contain the FMAID:
http://data.bioontology.org/ontologies/FMA/classes?include=prefLabel,properties&format=xml

Paul


On Nov 1, 2013, at 7:12 PM, Maxwell Neal <mneal at u.washington.edu> wrote:

> Hi Manuel,
> 
> I have a question similar to Carlos's:
> 
> I'm trying to use the BioPortal REST services to search over the FMA and I want the results (formatted in xml) to include the FMAID property associated with each term. I haven't been able to determine the right incantation and would appreciate some help.
> 
> Thanks!
> 
> M
> 
> ---------------------------------
> Maxwell Neal
> 
> Post-doctoral researcher
> Department of Bioengineering
> University of Washington
> mneal at uw.edu
> ---------------------------------
> 
> 
> 
> 
> 
> 
> 
> 
> On Nov 1, 2013, at 6:46 PM, manuelso wrote:
> 
>> Hi Carlos,
>> 
>> The default REST class call does not return all the properties attached to a term. If you want to see all properties you can add the following parameter to your call:
>> 
>> ?include=prefLabel,synonyms,definitions,properties
>> 
>> something like this would work:
>> 
>> http://data.bioontology.org/ontologies/MEDLINEPLUS/classes/http%3A%2F%2Fpurl.bioontology.org%2Fontology%2FMEDLINEPLUS%2F31?include=prefLabel,synonyms,definitions,properties
>> 
>> Manuel
>> 
>> 
>> On Nov 1, 2013, at 6:14 PM, Carlos Luis Sánchez Bocanegra <carlosl.sanchez at gmail.com> wrote:
>> 
>>> Hi everyone,
>>> 
>>> I´m diving on the bioontology REST API, try to exploit all their possibilities including on this API.
>>> 
>>> I take some time to adapt and get manual results and finally I think I can manage with the API. I need to access to the MP_HEALTH_TOPIC_URL value on the Class Medicine (for example) http://bioportal.bioontology.org/ontologies/MEDLINEPLUS?p=classes&conceptid=http%3A%2F%2Fpurl.bioontology.org%2Fontology%2FMEDLINEPLUS%2F31#details
>>> 
>>> But REST API does not give me this value: http://data.bioontology.org/ontologies/MEDLINEPLUS/classes/http%3A%2F%2Fpurl.bioontology.org%2Fontology%2FMEDLINEPLUS%2F31 : http://purl.bioontology.org/ontology/MEDLINEPLUS/31
>>> 
>>> In the rest result I can´t find MP_HEALTH_TOPIC_URL.
>>> 
>>> Thank your for helping me.
>>> 
>>> C.
>>> _______________________________________________
>>> bioontology-support mailing list
>>> bioontology-support at lists.stanford.edu
>>> https://mailman.stanford.edu/mailman/listinfo/bioontology-support
>> 
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