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[bioontology-support] Access MP_HEALTH_TOPIC_URL value through REST API

manuelso manuelso at stanford.edu
Mon Nov 4 09:00:22 PST 2013


Carlos,

Answers inlined below …


On Nov 2, 2013, at 4:20 AM, Carlos Luis Sánchez Bocanegra <carlosl.sanchez at gmail.com> wrote:

> Dear all,
> 
> The following class: http://data.bioontology.org/ontologies/NCIT/classes/http%3A%2F%2Fncicb.nci.nih.gov%2Fxml%2Fowl%2FEVS%2FThesaurus.owl%23C2985?include=prefLabel,synonyms,definitions,properties
> 
> Consult another OWL files from the NCIT Ontology. Surprisely I found no external links on their description (remembering the MP_HEALTH_TOPIC_URL on MEDLINEPLUS Onto). That means that no all Class contain links in their properties, doesn´t it?.  Is there any way to deep in the class for obtaining external information? (mapping possible?).

You might want to look at our mapping dataset:

http://bioportal.bioontology.org/mappings

Though I am not sure if this is what you need. I am not sure what are external references in this context.

> 
> In this case which Ontologies are supporting external references?.

Carlos, can you explain a bit your use case and what you mean by external references ?

Thanks,

Manuel

> 
> My apologizes for these stupid queries, but i´m begining on this thread.
> 
> Thank you in advance.
> 
> 
> 2013/11/2 Carlos Luis Sánchez Bocanegra <carlosl.sanchez at gmail.com>
> Thanks Manuel!
> 
> Other question I have on my mind is the Category. What is the use of it? How can I manage over my queries?
> 
> Thanks a lot.
> C.
> 
> 
> 2013/11/2 manuelso <manuelso at stanford.edu>
> Hi Carlos,
> 
> The default REST class call does not return all the properties attached to a term. If you want to see all properties you can add the following parameter to your call:
> 
> ?include=prefLabel,synonyms,definitions,properties
> 
> something like this would work:
> 
> http://data.bioontology.org/ontologies/MEDLINEPLUS/classes/http%3A%2F%2Fpurl.bioontology.org%2Fontology%2FMEDLINEPLUS%2F31?include=prefLabel,synonyms,definitions,properties
> 
> Manuel
> 
> 
> On Nov 1, 2013, at 6:14 PM, Carlos Luis Sánchez Bocanegra <carlosl.sanchez at gmail.com> wrote:
> 
>> Hi everyone,
>> 
>> I´m diving on the bioontology REST API, try to exploit all their possibilities including on this API.
>> 
>> I take some time to adapt and get manual results and finally I think I can manage with the API. I need to access to the MP_HEALTH_TOPIC_URL value on the Class Medicine (for example) http://bioportal.bioontology.org/ontologies/MEDLINEPLUS?p=classes&conceptid=http%3A%2F%2Fpurl.bioontology.org%2Fontology%2FMEDLINEPLUS%2F31#details
>> 
>> But REST API does not give me this value: http://data.bioontology.org/ontologies/MEDLINEPLUS/classes/http%3A%2F%2Fpurl.bioontology.org%2Fontology%2FMEDLINEPLUS%2F31 : http://purl.bioontology.org/ontology/MEDLINEPLUS/31
>> 
>> In the rest result I can´t find MP_HEALTH_TOPIC_URL.
>> 
>> Thank your for helping me.
>> 
>> C.
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> 
> 
> 
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