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[bioontology-support] Access MP_HEALTH_TOPIC_URL value through REST API

manuelso manuelso at stanford.edu
Tue Nov 5 17:10:16 PST 2013


Hi Carlos,

So our mapping dataset does not contain the information you are looking for.

You probably need to traverse ontology classes looking for links that can resolve to Web documents because definitely not all classes in BioPortal have links to external references.

Best,

Manuel



On Nov 5, 2013, at 3:26 AM, Carlos Luis Sánchez Bocanegra <carlosl.sanchez at gmail.com> wrote:

> Dear all and Manuel,
> 
> First, thanks for your great support.
> 
> My research is focussing on the semantic web in health sector, how to exploit there references/terms and to analyze them. When I say external references I mentioned the source of the obtained concept, mainly to retrieve information a patient from a trusted health information -not only a description or term. As an example MEDLINEPLUS collects a set of web page that explains the concept.
> 
> I don´t know If I explaind crearly, my apologize. I hope it would be better explained.
> 
> Best regards
> C. 
> 
> 
> 2013/11/4 manuelso <manuelso at stanford.edu>
> Carlos,
> 
> Answers inlined below …
> 
> 
> On Nov 2, 2013, at 4:20 AM, Carlos Luis Sánchez Bocanegra <carlosl.sanchez at gmail.com> wrote:
> 
>> Dear all,
>> 
>> The following class: http://data.bioontology.org/ontologies/NCIT/classes/http%3A%2F%2Fncicb.nci.nih.gov%2Fxml%2Fowl%2FEVS%2FThesaurus.owl%23C2985?include=prefLabel,synonyms,definitions,properties
>> 
>> Consult another OWL files from the NCIT Ontology. Surprisely I found no external links on their description (remembering the MP_HEALTH_TOPIC_URL on MEDLINEPLUS Onto). That means that no all Class contain links in their properties, doesn´t it?.  Is there any way to deep in the class for obtaining external information? (mapping possible?).
> 
> You might want to look at our mapping dataset:
> 
> http://bioportal.bioontology.org/mappings
> 
> Though I am not sure if this is what you need. I am not sure what are external references in this context.
> 
>> 
>> In this case which Ontologies are supporting external references?.
> 
> Carlos, can you explain a bit your use case and what you mean by external references ?
> 
> Thanks,
> 
> Manuel
> 
>> 
>> My apologizes for these stupid queries, but i´m begining on this thread.
>> 
>> Thank you in advance.
>> 
>> 
>> 2013/11/2 Carlos Luis Sánchez Bocanegra <carlosl.sanchez at gmail.com>
>> Thanks Manuel!
>> 
>> Other question I have on my mind is the Category. What is the use of it? How can I manage over my queries?
>> 
>> Thanks a lot.
>> C.
>> 
>> 
>> 2013/11/2 manuelso <manuelso at stanford.edu>
>> Hi Carlos,
>> 
>> The default REST class call does not return all the properties attached to a term. If you want to see all properties you can add the following parameter to your call:
>> 
>> ?include=prefLabel,synonyms,definitions,properties
>> 
>> something like this would work:
>> 
>> http://data.bioontology.org/ontologies/MEDLINEPLUS/classes/http%3A%2F%2Fpurl.bioontology.org%2Fontology%2FMEDLINEPLUS%2F31?include=prefLabel,synonyms,definitions,properties
>> 
>> Manuel
>> 
>> 
>> On Nov 1, 2013, at 6:14 PM, Carlos Luis Sánchez Bocanegra <carlosl.sanchez at gmail.com> wrote:
>> 
>>> Hi everyone,
>>> 
>>> I´m diving on the bioontology REST API, try to exploit all their possibilities including on this API.
>>> 
>>> I take some time to adapt and get manual results and finally I think I can manage with the API. I need to access to the MP_HEALTH_TOPIC_URL value on the Class Medicine (for example) http://bioportal.bioontology.org/ontologies/MEDLINEPLUS?p=classes&conceptid=http%3A%2F%2Fpurl.bioontology.org%2Fontology%2FMEDLINEPLUS%2F31#details
>>> 
>>> But REST API does not give me this value: http://data.bioontology.org/ontologies/MEDLINEPLUS/classes/http%3A%2F%2Fpurl.bioontology.org%2Fontology%2FMEDLINEPLUS%2F31 : http://purl.bioontology.org/ontology/MEDLINEPLUS/31
>>> 
>>> In the rest result I can´t find MP_HEALTH_TOPIC_URL.
>>> 
>>> Thank your for helping me.
>>> 
>>> C.
>>> _______________________________________________
>>> bioontology-support mailing list
>>> bioontology-support at lists.stanford.edu
>>> https://mailman.stanford.edu/mailman/listinfo/bioontology-support
>> 
>> 
>> 
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> 
> 

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