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[bioontology-support] Access MP_HEALTH_TOPIC_URL value through REST API

Carlos Luis Sánchez Bocanegra carlosl.sanchez at gmail.com
Wed Nov 6 02:28:31 PST 2013


Hi again,


2013/11/6 manuelso <manuelso at stanford.edu>

> Hi Carlos,
>
> So our mapping dataset does not contain the information you are looking
> for.
>
> You probably need to traverse ontology classes looking for links that can
> resolve to Web documents because definitely not all classes in BioPortal
> have links to external references.
>
Other question, when you mention "to traverse ontology classed", are you
thinking on mapping the node? just only to confirm that.

Thank for your attention.

>
> Best,
>
> Manuel
>
>
>
> On Nov 5, 2013, at 3:26 AM, Carlos Luis Sánchez Bocanegra <
> carlosl.sanchez at gmail.com> wrote:
>
> Dear all and Manuel,
>
> First, thanks for your great support.
>
> My research is focussing on the semantic web in health sector, how to
> exploit there references/terms and to analyze them. When I say external
> references I mentioned the source of the obtained concept, mainly to
> retrieve information a patient from a trusted health information -not only
> a description or term. As an example MEDLINEPLUS collects a set of web page
> that explains the concept.
>
> I don´t know If I explaind crearly, my apologize. I hope it would be
> better explained.
>
> Best regards
> C.
>
>
> 2013/11/4 manuelso <manuelso at stanford.edu>
>
>> Carlos,
>>
>> Answers inlined below …
>>
>>
>> On Nov 2, 2013, at 4:20 AM, Carlos Luis Sánchez Bocanegra <
>> carlosl.sanchez at gmail.com> wrote:
>>
>> Dear all,
>>
>> The following class:
>> http://data.bioontology.org/ontologies/NCIT/classes/http%3A%2F%2Fncicb.nci.nih.gov%2Fxml%2Fowl%2FEVS%2FThesaurus.owl%23C2985?include=prefLabel,synonyms,definitions,properties
>>
>> Consult another OWL files from the NCIT Ontology. Surprisely I found no
>> external links on their description (remembering the MP_HEALTH_TOPIC_URL
>> on MEDLINEPLUS Onto). That means that no all Class contain links in their
>> properties, doesn´t it?.  Is there any way to deep in the class for
>> obtaining external information? (mapping possible?).
>>
>>
>> You might want to look at our mapping dataset:
>>
>> http://bioportal.bioontology.org/mappings
>>
>> Though I am not sure if this is what you need. I am not sure what are
>> external references in this context.
>>
>>
>> In this case which Ontologies are supporting external references?.
>>
>>
>> Carlos, can you explain a bit your use case and what you mean by external
>> references ?
>>
>> Thanks,
>>
>> Manuel
>>
>>
>> My apologizes for these stupid queries, but i´m begining on this thread.
>>
>> Thank you in advance.
>>
>>
>> 2013/11/2 Carlos Luis Sánchez Bocanegra <carlosl.sanchez at gmail.com>
>>
>>> Thanks Manuel!
>>>
>>> Other question I have on my mind is the Category. What is the use of it?
>>> How can I manage over my queries?
>>>
>>> Thanks a lot.
>>> C.
>>>
>>>
>>> 2013/11/2 manuelso <manuelso at stanford.edu>
>>>
>>>> Hi Carlos,
>>>>
>>>> The default REST class call does not return all the properties attached
>>>> to a term. If you want to see all properties you can add the following
>>>> parameter to your call:
>>>>
>>>> ?include=prefLabel,synonyms,definitions,properties
>>>>
>>>> something like this would work:
>>>>
>>>>
>>>> http://data.bioontology.org/ontologies/MEDLINEPLUS/classes/http%3A%2F%2Fpurl.bioontology.org%2Fontology%2FMEDLINEPLUS%2F31?include=prefLabel,synonyms,definitions,properties<http://data.bioontology.org/ontologies/MEDLINEPLUS/classes/http://purl.bioontology.org/ontology/MEDLINEPLUS/31?include=prefLabel,synonyms,definitions,properties>
>>>>
>>>> Manuel
>>>>
>>>>
>>>> On Nov 1, 2013, at 6:14 PM, Carlos Luis Sánchez Bocanegra <
>>>> carlosl.sanchez at gmail.com> wrote:
>>>>
>>>> Hi everyone,
>>>>
>>>> I´m diving on the bioontology REST API, try to exploit all their
>>>> possibilities including on this API.
>>>>
>>>> I take some time to adapt and get manual results and finally I think I
>>>> can manage with the API. I need to access to the MP_HEALTH_TOPIC_URL
>>>> value on the Class Medicine (for example)
>>>> http://bioportal.bioontology.org/ontologies/MEDLINEPLUS?p=classes&conceptid=http%3A%2F%2Fpurl.bioontology.org%2Fontology%2FMEDLINEPLUS%2F31#details
>>>>
>>>> But REST API does not give me this value:
>>>> http://data.bioontology.org/ontologies/MEDLINEPLUS/classes/http%3A%2F%2Fpurl.bioontology.org%2Fontology%2FMEDLINEPLUS%2F31
>>>>  : http://purl.bioontology.org/ontology/MEDLINEPLUS/31
>>>>
>>>> In the rest result I can´t find MP_HEALTH_TOPIC_URL.
>>>>
>>>> Thank your for helping me.
>>>>
>>>> C.
>>>> _______________________________________________
>>>> bioontology-support mailing list
>>>> bioontology-support at lists.stanford.edu
>>>> https://mailman.stanford.edu/mailman/listinfo/bioontology-support
>>>>
>>>>
>>>>
>>>
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>
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