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[bioontology-support] Old NCBO Annotators parameters ?

Clement Jonquet jonquet at lirmm.fr
Mon Nov 18 00:18:51 PST 2013


Hi all, 

 

Will the old NCBO Annotator parameters :

longestOnly

wholeWordOnly

filterNumber

minTermSize

withSynonyms

come back sometime in the new implementation of the Annotator ?

 

Also, what happen to the  Scored parameter, and more important, is there any
more scoring ?

This was quite important to distinguish annotations one another and to
aggregate them all.

 

Also, is the meaning of the new 'ontologies' parameter 

ontologiesToExpand or  ontologiesToKeepInResult ?

i.e., are you using all the ontologies to expand with mappings and then keep
only the results in the 'ontologies' parameter ? (remember the "treatment" &
"therapeutic procedure" example.

 

Bye 

Clement

 

 

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Dr. Clement JONQUET  -  PhD in Informatics  -  Assistant Professor

PI of the  <http://www.lirmm.fr/sifr/> SIFR project: Semantic Indexing of
French Biomedical Data Resources (ANR, UM2, CNRS)

 

 <mailto:jonquet at lirmm.fr> jonquet at lirmm.fr

 <http://www.lirmm.fr/~jonquet> http://www.lirmm.fr/~jonquet 

 

                University of Montpellier                          Tel:
+33/4 67 14 97 43

                LIRMM
Fax:                     +33/4 67  41 85 00           

                161 rue Ada
Skype:                 clementpro
                34095 Montpellier Cdx 5                            Twitter:
<http://twitter.com/jonquet_lirmm> @jonquet_lirmm

                France
Google:                <mailto:jonquet.lirmm at gmail.com>
jonquet.lirmm at gmail.com

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