Search Mailing List Archives

Limit search to: Subject & Body Subject Author
Sort by: Reverse Sort
Limit to: All This Week Last Week This Month Last Month
Select Date Range     through    

[bioontology-support] Old NCBO Annotators parameters ?

Clement Jonquet jonquet at
Mon Nov 18 00:18:51 PST 2013

Hi all, 


Will the old NCBO Annotator parameters :






come back sometime in the new implementation of the Annotator ?


Also, what happen to the  Scored parameter, and more important, is there any
more scoring ?

This was quite important to distinguish annotations one another and to
aggregate them all.


Also, is the meaning of the new 'ontologies' parameter 

ontologiesToExpand or  ontologiesToKeepInResult ?

i.e., are you using all the ontologies to expand with mappings and then keep
only the results in the 'ontologies' parameter ? (remember the "treatment" &
"therapeutic procedure" example.







Dr. Clement JONQUET  -  PhD in Informatics  -  Assistant Professor

PI of the  <> SIFR project: Semantic Indexing of
French Biomedical Data Resources (ANR, UM2, CNRS)


 <mailto:jonquet at> jonquet at



                University of Montpellier                          Tel:
+33/4 67 14 97 43

Fax:                     +33/4 67  41 85 00           

                161 rue Ada
Skype:                 clementpro
                34095 Montpellier Cdx 5                            Twitter:
<> @jonquet_lirmm

Google:                <mailto:jonquet.lirmm at>
jonquet.lirmm at






-------------- next part --------------
An HTML attachment was scrubbed...
URL: <>
-------------- next part --------------
A non-text attachment was scrubbed...
Name: image001.png
Type: image/png
Size: 204 bytes
Desc: not available
URL: <>

More information about the bioontology-support mailing list