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[bioontology-support] Is Bioportal down?

Paul R Alexander palexander at stanford.edu
Tue Nov 19 11:17:00 PST 2013


Jie,

It looks like the submission was successful. It is currently queued for processing.

Paul


On Nov 19, 2013, at 8:34 AM, Jie Zheng <jiezheng at upenn.edu> wrote:

> Hi Paul,
> 
> I tried Bioportal today. Finally I can see the submission form. However, new submission failed and the page showed the standard Bioportal error message:
> "We're sorry but something has gone wrong. We have been notified of this error."
> 
> Could you please check it? Do you need me to send the new version of OBI owl file? I would like to set the URL for automatically updates. Unfortunately, the OBO PURL server down. I think I'd better not to do it now.
> 
> Thanks,
> 
> Jie
> 
> 
> On 11/18/2013 6:25 PM, Paul R Alexander wrote:
>> Jie,
>> 
>> I think it’s now working, at least for the time being. We’re still working on a more permanent solution. Sorry for the trouble.
>> 
>> Paul
>> 
>> 
>> On Nov 18, 2013, at 12:23 PM, Jie Zheng <jiezheng at upenn.edu> wrote:
>> 
>>> Thanks Paul.
>>> 
>>> Current I can view page:
>>> http://bioportal.bioontology.org/ontologies/OBI
>>> 
>>> Since I want to upload new release version of OBI, I clicked 'Add submission' like. I got error message:
>>> "We're sorry but something has gone wrong. We have been notified of this error."
>>> 
>>> Same error when I click 'Edit submission information (2012-07-01)' link.
>>> 
>>> Could you please check it?
>>> 
>>> In addition, the information under 'Submissions' are empty on the page: http://bioportal.bioontology.org/ontologies/OBI. It means no record of submission history.
>>> 
>>> Thanks,
>>> 
>>> Jie
>>> 
>>> 
>>> On 11/18/2013 2:59 PM, Paul R Alexander wrote:
>>>> Jie,
>>>> 
>>>> These appear to be working now. Please let us know if they are still broken for you.
>>>> 
>>>> Paul
>>>> 
>>>> 
>>>> On Nov 18, 2013, at 11:21 AM, Jie Zheng <jiezheng at pcbi.upenn.edu> wrote:
>>>> 
>>>>> I cannot view OBO Foundry ontologies on the Bioportal website.
>>>>> http://bioportal.bioontology.org/ontologies/OBI
>>>>> http://bioportal.bioontology.org/ontologies/CHEBI
>>>>>    Both gave "We're sorry but something has gone wrong. We have been notified of this error." error message.
>>>>> 
>>>>> Could anyone fix it?
>>>>> 
>>>>> Thanks!
>>>>> 
>>>>> Jie
>>>>> 
>>>>> Jie Zheng
>>>>> Computational Biology and Informatics Laboratory
>>>>> Department of Genetics
>>>>> University of Pennsylvania
>>>>> 
>>>>> _______________________________________________
>>>>> bioontology-support mailing list
>>>>> bioontology-support at lists.stanford.edu
>>>>> https://mailman.stanford.edu/mailman/listinfo/bioontology-support
> 



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