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[bioontology-support] Is Bioportal down?

Jie Zheng jiezheng at upenn.edu
Tue Nov 19 14:55:18 PST 2013


Forgot to mention one thing, I found the ontology term labels in 
webService.owl is not user friendly. I would like to discuss with Chris 
and we may want to improve it by adding Web Service user friendly labels 
in the ontology.

Jie

On 11/19/2013 11:34 AM, Jie Zheng wrote:
> Hi Paul,
>
> I tried Bioportal today. Finally I can see the submission form. 
> However, new submission failed and the page showed the standard 
> Bioportal error message:
> "We're sorry but something has gone wrong. We have been notified of 
> this error."
>
> Could you please check it? Do you need me to send the new version of 
> OBI owl file? I would like to set the URL for automatically updates. 
> Unfortunately, the OBO PURL server down. I think I'd better not to do 
> it now.
>
> Thanks,
>
> Jie
>
>
> On 11/18/2013 6:25 PM, Paul R Alexander wrote:
>> Jie,
>>
>> I think it’s now working, at least for the time being. We’re still 
>> working on a more permanent solution. Sorry for the trouble.
>>
>> Paul
>>
>>
>> On Nov 18, 2013, at 12:23 PM, Jie Zheng <jiezheng at upenn.edu> wrote:
>>
>>> Thanks Paul.
>>>
>>> Current I can view page:
>>> http://bioportal.bioontology.org/ontologies/OBI
>>>
>>> Since I want to upload new release version of OBI, I clicked 'Add 
>>> submission' like. I got error message:
>>> "We're sorry but something has gone wrong. We have been notified of 
>>> this error."
>>>
>>> Same error when I click 'Edit submission information (2012-07-01)' 
>>> link.
>>>
>>> Could you please check it?
>>>
>>> In addition, the information under 'Submissions' are empty on the 
>>> page: http://bioportal.bioontology.org/ontologies/OBI. It means no 
>>> record of submission history.
>>>
>>> Thanks,
>>>
>>> Jie
>>>
>>>
>>> On 11/18/2013 2:59 PM, Paul R Alexander wrote:
>>>> Jie,
>>>>
>>>> These appear to be working now. Please let us know if they are 
>>>> still broken for you.
>>>>
>>>> Paul
>>>>
>>>>
>>>> On Nov 18, 2013, at 11:21 AM, Jie Zheng <jiezheng at pcbi.upenn.edu> 
>>>> wrote:
>>>>
>>>>> I cannot view OBO Foundry ontologies on the Bioportal website.
>>>>> http://bioportal.bioontology.org/ontologies/OBI
>>>>> http://bioportal.bioontology.org/ontologies/CHEBI
>>>>>     Both gave "We're sorry but something has gone wrong. We have 
>>>>> been notified of this error." error message.
>>>>>
>>>>> Could anyone fix it?
>>>>>
>>>>> Thanks!
>>>>>
>>>>> Jie
>>>>>
>>>>> Jie Zheng
>>>>> Computational Biology and Informatics Laboratory
>>>>> Department of Genetics
>>>>> University of Pennsylvania
>>>>>
>>>>> _______________________________________________
>>>>> bioontology-support mailing list
>>>>> bioontology-support at lists.stanford.edu
>>>>> https://mailman.stanford.edu/mailman/listinfo/bioontology-support
>



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