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[bioontology-support] Extracting parent child relationships using the web service
Ray Fergerson
ray.fergerson at stanford.edu
Wed Nov 20 16:57:15 PST 2013
Mark,
You should use the “tree” call instead. This is the call the UI uses to
display the hierarchy. It is tuned to give exactly the necessary
information.
http://data.bioontology.org/documentation#Class
Ray
From: bioontology-support-bounces at lists.stanford.edu
[mailto:bioontology-support-bounces at lists.stanford.edu] On Behalf Of Mark
Gerard
Sent: Tuesday, November 12, 2013 10:49 AM
To: bioontology-support at lists.stanford.edu
Subject: [bioontology-support] Extracting parent child relationships using
the web service
Hi all -
I have been trying to get the hierarchical information as displayed on the
web interface @"http://bioportal.bioontology.org/" when a term is searched
in a given ontology -
This is what I intend to achieve =>
https://trac.clinovo.com/clincapture/attachment/ticket/741/howTo.jpg
Context:
Given the information returned by the web service, we intend to
programmatic-ally build this hierarchy (really, display the fields as shown
in the screen shot above) in another system (open source application =>
clincapture) which is using bio-portal as the end point for medical coding.
What I have done so for:
1. I am able to use the old "http://rest.bioontology.org" (I am yet to get
acquainted with the new web service) to extract the coded term for a given
verbatim term entered by the user in our system
2. I have tried to work with the view extraction service but it seems to me
that it only returns one subclass of the concept (the immediate sub class) -
I am looking for the entire hierarchy
3. I have also tinkered with the RDF term service but it would appear that
the generated xml does not have the entire hierarchy - It would seem that
the returned xml cannot allow me to walk back to the root element (as
depicted on the UX)
I know I am missing something or have probably not looked somewhere, can
anyone give me some leads as to how I can retrieve the information in the
tree view (With the hierarchy)? I will really appreciate the help!
Mark
--
Mark Gerard
Software Developer
<mailto:sophie.mccallum at clinovo.com> mark.gerard at clinovo.com
Cell: (256) 794323934
Tel: (256) 794323934
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