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[bioontology-support] Search by UMLS CUI

François Schiettecatte fschiettecatte at gmail.com
Tue Oct 1 10:49:06 PDT 2013


Hi

I am the software developer working on OMIM.

Last year these searches worked, but they don't work anymore, have they changed?

	http://bioportal.bioontology.org/search?q=C0221581&searchproperties=true

Cheers

François



On Aug 15, 2012, at 1:55 PM, Paul R Alexander <palexander at stanford.edu> wrote:

> Yes, we can do that.
> 
> To just search the properties, use this URL:
> http://bioportal.bioontology.org/search?q=C0221581&searchproperties=true
> 
> If you need exact matches, you can add:
> exactmatch=true
> 
> If you want to show the advanced options in the UI (which will show the checkboxes), then add this:
> opt=advanced
> 
> You can also limit the search to particular ontologies by adding:
> ontologyids=1032,1104,1007
> 
> Let me know if you have questions.
> 
> Paul
> 
> 
> 
> On 8/15/12 9:56 AM, François Schiettecatte wrote:
>> Paul
>> 
>> I spoke too soon, the form is driven by a POST, what I am looking for is to link out to your website and have it run the search on the ID for me, something along the lines of :
>> 
>> 	http://bioportal.bioontology.org/search?search=C0221581&search[include_props]=1
>> 
>> For example Peter Robinson of HPO provides this format:
>> 
>> 	http://www.human-phenotype-ontology.org/hpoweb/showterm?id=HP:0001511
>> 
>> It this possible?
>> 
>> 
>> Cheers
>> 
>> François
>> 
>> 
>> On Aug 14, 2012, at 8:58 PM, Paul R Alexander <palexander at stanford.edu> wrote:
>> 
>>> François,
>>> 
>>> The process for searching via a property value like CUI is different depending on whether or not you are using the REST service or the Web UI.
>>> 
>>> If you are using the UI, then click "advanced options" and select "Property values" to include them in your search. Searching on a CUI id (EX: C0221581) should return matching terms. You can also restrict results to particular ontologies.
>>> 
>>> You can achieve the same results on the REST service by using the "includeproperties" query parameter, documented here:
>>> http://www.bioontology.org/wiki/index.php/BioPortal_REST_services#Search_BioPortal
>>> 
>>> Let me know if you have other questions.
>>> 
>>> Paul
>>> 
>>> 
>>> On 8/14/12 6:30 AM, François Schiettecatte wrote:
>>>> Hi
>>>> 
>>>> I was wondering if it was possible to search by UMLS CUI?
>>>> 
>>>> I am working on both OMIM and the Baylor-Hopkins Center for Mendelian Genomics and am trying to find a decent link out for UMLS CUIs and was hoping that BioOntology would be able to provide me that.
>>>> 
>>>> Thanks
>>>> 
>>>> François
>>>> 
>>>> 
> 

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