Search Mailing List Archives


Limit search to: Subject & Body Subject Author
Sort by: Reverse Sort
Limit to: All This Week Last Week This Month Last Month
Select Date Range     through    

[bioontology-support] Search by UMLS CUI

Paul R Alexander palexander at stanford.edu
Tue Oct 1 10:56:00 PDT 2013


François,

This is a bug that we are currently working to resolve.

Best,
Paul


On Oct 1, 2013, at 10:49 AM, François Schiettecatte <fschiettecatte at gmail.com> wrote:

> Hi
> 
> I am the software developer working on OMIM.
> 
> Last year these searches worked, but they don't work anymore, have they changed?
> 
> 	http://bioportal.bioontology.org/search?q=C0221581&searchproperties=true
> 
> Cheers
> 
> François
> 
> 
> 
> On Aug 15, 2012, at 1:55 PM, Paul R Alexander <palexander at stanford.edu> wrote:
> 
>> Yes, we can do that.
>> 
>> To just search the properties, use this URL:
>> http://bioportal.bioontology.org/search?q=C0221581&searchproperties=true
>> 
>> If you need exact matches, you can add:
>> exactmatch=true
>> 
>> If you want to show the advanced options in the UI (which will show the checkboxes), then add this:
>> opt=advanced
>> 
>> You can also limit the search to particular ontologies by adding:
>> ontologyids=1032,1104,1007
>> 
>> Let me know if you have questions.
>> 
>> Paul
>> 
>> 
>> 
>> On 8/15/12 9:56 AM, François Schiettecatte wrote:
>>> Paul
>>> 
>>> I spoke too soon, the form is driven by a POST, what I am looking for is to link out to your website and have it run the search on the ID for me, something along the lines of :
>>> 
>>> 	http://bioportal.bioontology.org/search?search=C0221581&search[include_props]=1
>>> 
>>> For example Peter Robinson of HPO provides this format:
>>> 
>>> 	http://www.human-phenotype-ontology.org/hpoweb/showterm?id=HP:0001511
>>> 
>>> It this possible?
>>> 
>>> 
>>> Cheers
>>> 
>>> François
>>> 
>>> 
>>> On Aug 14, 2012, at 8:58 PM, Paul R Alexander <palexander at stanford.edu> wrote:
>>> 
>>>> François,
>>>> 
>>>> The process for searching via a property value like CUI is different depending on whether or not you are using the REST service or the Web UI.
>>>> 
>>>> If you are using the UI, then click "advanced options" and select "Property values" to include them in your search. Searching on a CUI id (EX: C0221581) should return matching terms. You can also restrict results to particular ontologies.
>>>> 
>>>> You can achieve the same results on the REST service by using the "includeproperties" query parameter, documented here:
>>>> http://www.bioontology.org/wiki/index.php/BioPortal_REST_services#Search_BioPortal
>>>> 
>>>> Let me know if you have other questions.
>>>> 
>>>> Paul
>>>> 
>>>> 
>>>> On 8/14/12 6:30 AM, François Schiettecatte wrote:
>>>>> Hi
>>>>> 
>>>>> I was wondering if it was possible to search by UMLS CUI?
>>>>> 
>>>>> I am working on both OMIM and the Baylor-Hopkins Center for Mendelian Genomics and am trying to find a decent link out for UMLS CUIs and was hoping that BioOntology would be able to provide me that.
>>>>> 
>>>>> Thanks
>>>>> 
>>>>> François
>>>>> 
>>>>> 
>> 
> 
> _______________________________________________
> bioontology-support mailing list
> bioontology-support at lists.stanford.edu
> https://mailman.stanford.edu/mailman/listinfo/bioontology-support



More information about the bioontology-support mailing list