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[bioontology-support] Search by UMLS CUI

Paul R Alexander palexander at stanford.edu
Fri Oct 4 11:46:37 PDT 2013


This is now working, sorry for the trouble.

Paul


On Oct 1, 2013, at 10:56 AM, Paul R Alexander <palexander at stanford.edu> wrote:

> François,
> 
> This is a bug that we are currently working to resolve.
> 
> Best,
> Paul
> 
> 
> On Oct 1, 2013, at 10:49 AM, François Schiettecatte <fschiettecatte at gmail.com> wrote:
> 
>> Hi
>> 
>> I am the software developer working on OMIM.
>> 
>> Last year these searches worked, but they don't work anymore, have they changed?
>> 
>> 	http://bioportal.bioontology.org/search?q=C0221581&searchproperties=true
>> 
>> Cheers
>> 
>> François
>> 
>> 
>> 
>> On Aug 15, 2012, at 1:55 PM, Paul R Alexander <palexander at stanford.edu> wrote:
>> 
>>> Yes, we can do that.
>>> 
>>> To just search the properties, use this URL:
>>> http://bioportal.bioontology.org/search?q=C0221581&searchproperties=true
>>> 
>>> If you need exact matches, you can add:
>>> exactmatch=true
>>> 
>>> If you want to show the advanced options in the UI (which will show the checkboxes), then add this:
>>> opt=advanced
>>> 
>>> You can also limit the search to particular ontologies by adding:
>>> ontologyids=1032,1104,1007
>>> 
>>> Let me know if you have questions.
>>> 
>>> Paul
>>> 
>>> 
>>> 
>>> On 8/15/12 9:56 AM, François Schiettecatte wrote:
>>>> Paul
>>>> 
>>>> I spoke too soon, the form is driven by a POST, what I am looking for is to link out to your website and have it run the search on the ID for me, something along the lines of :
>>>> 
>>>> 	http://bioportal.bioontology.org/search?search=C0221581&search[include_props]=1
>>>> 
>>>> For example Peter Robinson of HPO provides this format:
>>>> 
>>>> 	http://www.human-phenotype-ontology.org/hpoweb/showterm?id=HP:0001511
>>>> 
>>>> It this possible?
>>>> 
>>>> 
>>>> Cheers
>>>> 
>>>> François
>>>> 
>>>> 
>>>> On Aug 14, 2012, at 8:58 PM, Paul R Alexander <palexander at stanford.edu> wrote:
>>>> 
>>>>> François,
>>>>> 
>>>>> The process for searching via a property value like CUI is different depending on whether or not you are using the REST service or the Web UI.
>>>>> 
>>>>> If you are using the UI, then click "advanced options" and select "Property values" to include them in your search. Searching on a CUI id (EX: C0221581) should return matching terms. You can also restrict results to particular ontologies.
>>>>> 
>>>>> You can achieve the same results on the REST service by using the "includeproperties" query parameter, documented here:
>>>>> http://www.bioontology.org/wiki/index.php/BioPortal_REST_services#Search_BioPortal
>>>>> 
>>>>> Let me know if you have other questions.
>>>>> 
>>>>> Paul
>>>>> 
>>>>> 
>>>>> On 8/14/12 6:30 AM, François Schiettecatte wrote:
>>>>>> Hi
>>>>>> 
>>>>>> I was wondering if it was possible to search by UMLS CUI?
>>>>>> 
>>>>>> I am working on both OMIM and the Baylor-Hopkins Center for Mendelian Genomics and am trying to find a decent link out for UMLS CUIs and was hoping that BioOntology would be able to provide me that.
>>>>>> 
>>>>>> Thanks
>>>>>> 
>>>>>> François
>>>>>> 
>>>>>> 
>>> 
>> 
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>> bioontology-support at lists.stanford.edu
>> https://mailman.stanford.edu/mailman/listinfo/bioontology-support
> 



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