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[bioontology-support] config for my own PURL server

Trish Whetzel plwhetzel at gmail.com
Sun Oct 13 09:19:22 PDT 2013


Is it still the case that URIs for ontologies in the OWL format are
displayed as provided in the OWL file?

Trish


On Fri, Oct 11, 2013 at 10:15 AM, Paul R Alexander
<palexander at stanford.edu>wrote:

> Jonathan,
>
> We use the OBO Foundry id policy to generate URIs for the full id. This is
> handled in code so there is no configuration option that would allow you to
> override the method used to generate the id, it would require changing the
> code itself by hardcoding your ontology id (or change the method used for
> all ontologies).
>
> Future versions of the appliance may work better with OBO ontologies where
> proper idspace mappings exist, though I don't think we've done any
> extensive testing in this area.
>
> Paul
>
>
> On Oct 11, 2013, at 7:44 AM, "Holt, Jonathan" <
> jonathan.holt at Vanderbilt.Edu> wrote:
>
>  I need help configuring my VM appliance to use my own PURL server.
>
>  I am editing in OBO-edit,  after I upload my ontology to my VM
> appliance, it create a new Full ID that points to the OBOfoundry site.
>  Since I haven't yet created a namespace with OBOfoundry, this is causing
> problems.
>
>  How do I configure the NCBO application to use my own PURL server and
> not the OBOfoundry site or the bioportal site?
>
>
>
>  Thanks,
>
>  Jonathan
>
>
>
>     .................................
>          Jonathan Holt, DO, MS
>
>             Assistant Professor of Biomedical Informatics and Medicine
>    Departments of Biomedical Informatics & Medicine, Division of Genetic
> Medicine
>  Vanderbilt University Medical Center
> 2209 Garland Ave
>        412 Eskind Biomedical Library
>  Nashville, TN  37232-8340
>  Phone:  615-322-8683
>  Fax: 615-875-1424
>
>  jonathan.holt at vanderbilt.edu
>  http://dbmi.mc.vanderbilt.edu/people/holt.html
>
>
>
>
>
>
>
>
>
>
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