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[bioontology-support] Trying to execute the Test page for Annotator REST Services (on Spring/Hibernate platform)...

Leyla Jael García Castro leylajael at gmail.com
Mon Oct 14 01:10:54 PDT 2013


Hi Al,

Just in case it is useful for you, I am copying a conversation from a
couple of days ago about the same subject

Cheers,

Hi,
>
> Thank you very much Jael for the tips.
>
> I was using the example perl script from
> https://bmir-gforge.stanford.edu/gf/project/client_examples/scmsvn/?action=browse&path=%2Ftrunk%2FPerl%2FAnnotator-Perl%2Fannotator.pl&view=markup which
> use the old URL for the Annotator (
> http://rest.bioontology.org/obs/annotator).
>
> It works now for me when I change it to
> http://data.bioontology.org/annotator.(And some of the parameter needs to
> be change for the new API as Jael mention
> http://data.bioontology.org/documentation#nav_annotator  )
>
> Cheers,
> Xin
>
>
> On 11 October 2013 19:31, Jael GarcíaCastro <leyla.jael.garcia at gmail.com>wrote:
> Hi all,
>
> I had the same problem early this week. I managed to work with the URL
> http://rest.bioontology.org/obs/annotator from Java. However, the API has
> changed. In case it is useful for you, this is what bioportal support
> people told me:
>
> The new API code is released at data.bioontology.org, so you should point
>> there and not stagedata.bioontology.org (this is our testing platform).
>>
>> rest.bioontology.org is essentially deprecated as of now, so new fixes
>> won't end up there.
>>
>
> You can find some documentation at
> http://data.bioontology.org/documentation#nav_annotator
>
> Hope it helps,
> Jael
>
>
> On Fri, Oct 11, 2013 at 6:35 PM, Michael Horvath <mhorvath at wakehealth.edu>wrote:
>
> I signed up earlier in the week and have been getting the same result with
> any api call.
>
>
>
> *From:* bioontology-support-bounces at lists.stanford.edu [mailto:
> bioontology-support-bounces at lists.stanford.edu] *On Behalf Of *Xin.H
> *Sent:* Friday, October 11, 2013 1:25 PM
> *To:* support at bioontology.org
> *Subject:* [bioontology-support] Getting error 'Invalid credentials
> supplied'
>
>
>
> Hi,
>
>
>
> I just created a new account and was trying to use the Annotator sample
> perl script  when I got this error:
>
> <?xml version="1.0" encoding="UTF-8"?>
>
> <errorStatus>
>
>   <accessedResource>/obs/annotator</accessedResource>
>
>   <accessDate>2013-10-11 10:18:11.60 PDT</accessDate>
>
>   <shortMessage>Forbidden</shortMessage>
>
>   <longMessage>Invalid credentials supplied: apiKey =
> f4f6d2e7-7726-402c-a4b0-6dfc533ad94e. Please visit
> http://bioportal.bioontology.org/account to get your API
> key.</longMessage>
>
>   <errorCode>403</errorCode>
>
> </errorStatus> at Fri Oct 11 18:18:13 2013
>
>
>
> I also tried the HTML client( http://rest.bioontology.org/test_oba.html)
> and got the same result.  I am sure that I am using the right key but
> somehow it doesn't work. Then I try creating another account and  the same
> happen. Could you help me with this?
>
>
>
> Many thanks,
>  Xin
>


On Mon, Oct 14, 2013 at 12:12 AM, Al Shapiro <als371 at yahoo.com> wrote:

> Hi There,
>
> I am trying to execute the Test page for Annotator REST Services (on
> Spring/Hibernate platform)...
>
> I have successfully registered, and I have obtained my API key as
> instructed, and I have pasted the key given to me into the API Key form,
> and when I Click on the Annotate button , I get then following error page:
>
> <errorStatus>
> <accessedResource>/obs/annotator</accessedResource>
> <accessDate>2013-10-13 16:04:26.242 PDT</accessDate>
> <shortMessage>Forbidden</shortMessage>
> <longMessage>
> Invalid credentials supplied: apiKey =
> a37aab21-01df-45b7-8e1b-8ce56cc36da1. Please visit
> http://bioportal.bioontology.org/account to get your API key.
> </longMessage>
> <errorCode>403</errorCode>
> </errorStatus>
>
> Is this Test page for Annotator REST Services still functioning?
>
> Please let me know what I have to do to use this Test page, if indeed it
> is still functioning?
>
> We are developing a very interesting Semantic Based Recommendation system
> for biological software...
>
> My logon Id is g6gals371...
>
> Thank you,
>
> Al Shapiro
>
>
>
>
>
> _______________________________________________
> bioontology-support mailing list
> bioontology-support at lists.stanford.edu
> https://mailman.stanford.edu/mailman/listinfo/bioontology-support
>
>
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