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[bioontology-support] Usage of BioPortal 4.0 via SPARQL

Ray Fergerson ray.fergerson at
Mon Oct 14 14:36:28 PDT 2013


There will be such a mechanism but it is not there yet. Note that the
current public endpoint was a prototype. The triple store structure
actually used in the current release is quite a bit different. Our goal is
to have this publically available by the end of the year (probably
sooner). Until then the current public endpoint is all we have.


-----Original Message-----
From: bioontology-support-bounces at
[mailto:bioontology-support-bounces at] On Behalf Of Erik
Sent: Monday, October 14, 2013 8:59 AM
To: support at
Subject: [bioontology-support] Usage of BioPortal 4.0 via SPARQL

Hi all,

is it still possible to access the ontology data of BioPortal via some
SPARQL endpoint in BioPortal 4.0 that will not be deprecated? While the
old SPARQL endpoint still exists, a smaller number of total ontologies is
reported there than is reported via the new API.
Can I still issue SPARQL requests now and in the future? If so, which
endpoint would I use?


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