Search Mailing List Archives


Limit search to: Subject & Body Subject Author
Sort by: Reverse Sort
Limit to: All This Week Last Week This Month Last Month
Select Date Range     through    

[bioontology-support] Resources with "no classes" [was Re: update to OBO Foundry list of resources]

Ray Fergerson ray.fergerson at stanford.edu
Wed Oct 16 17:08:03 PDT 2013


Melanie,

These are slowing being updated. We had to reparse all OBO ontologies to
fix another problem and the metrics calculations had to also be redone.
For example PR now works, while others are not yet there. They should all
be there by tomorrow.

Ray

-----Original Message-----
From: Melanie Courtot [mailto:mcourtot at gmail.com]
Sent: Wednesday, October 16, 2013 9:13 AM
To: Ray Fergerson
Cc: support at bioontology.org; Ramona Walls
Subject: Resources with "no classes" [was Re: [bioontology-support] update
to OBO Foundry list of resources]

Thanks Ray!
When I look at the metrics on the
http://bioportal.bioontology.org/ontologies?filter=OBO_Foundry page, I see
however that most of those classes show 0 classes. For example for PR, the
Protein Ontology. Upon checking the details of PR, I see that at
http://bioportal.bioontology.org/ontologies/PR?p=classes it does show
multiple classes (as it should)

Any idea what went wrong?

Thanks,
Melanie


On 2013-10-11, at 2:54 PM, Ray Fergerson wrote:

> Done.
>
> Ray
>
> -----Original Message-----
> From: bioontology-support-bounces at lists.stanford.edu
> [mailto:bioontology-support-bounces at lists.stanford.edu] On Behalf Of
> Melanie Courtot
> Sent: Thursday, October 10, 2013 3:51 PM
> To: support at bioontology.org Support
> Cc: Ramona Walls
> Subject: [bioontology-support] update to OBO Foundry list of resources
>
> Hi,
>
> As shown at [1], two new resources have been promoted to OBO Foundry
> status, the Plant Ontology (PO) and the Ontology for Biomedical
> Investigations (OBI) Could you update their entries so the page at [2]
> reflects those changes?
>
> Cheers,
> Melanie
>
>
> [1]
> http://sourceforge.net/mailarchive/forum.php?thread_name=CAJYF1k5g_pn5
> hwz7
> f5uR3aB380fM68WNg9s4y%3Dq4QLCmpQEb2g%40mail.gmail.com&forum_name=obo-d
> iscu
> ss
> [2] http://bioportal.bioontology.org/ontologies?filter=OBO_Foundry
>
>
> ---
> Mélanie Courtot
> Ph.D. Candidate,
> BCCRC - Terry Fox Laboratory - 12th floor
> 675 West 10th Avenue
> Vancouver, BC
> V5Z 1L3, Canada
>
>
>
>
>
>
>
>
>
>
>
> _______________________________________________
> bioontology-support mailing list
> bioontology-support at lists.stanford.edu
> https://mailman.stanford.edu/mailman/listinfo/bioontology-support



More information about the bioontology-support mailing list