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[bioontology-support] Annotator parameters and documentation

Trish Whetzel whetzel at ucsd.edu
Wed Oct 16 23:53:46 PDT 2013


Thanks for the updates. Does the documentation indicate which parameters are required in the new API? Also, the link for the documentation at the bottom of the Annotator page links to "stagedata".

Trish 


On Oct 16, 2013, at 10:29 AM, Paul R Alexander <palexander at stanford.edu> wrote:

> It does use a default list. We will add these to the documentation.
> 
> The Annotator was returning mappings by default due to a bug that has been fixed. The mappings (when included) come from the entire mapping data set. In the future there will be options to filter based on source.
> 
> Paul
> 
> 
> On Oct 14, 2013, at 10:53 AM, Trish Whetzel <whetzel at ucsd.edu> wrote:
> 
>> With the new API release, does the Annotator still use a default list of stop words? I didn't notice these documented here: http://data.bioontology.org/documentation#nav_annotator  However, for the previous API version a default list of stop words could be included and these were accessed with the call: http://rest.bioontology.org/obs/stopwords?apikey=<APIKey>
>> 
>> Also, the BioPortal Annotator Web page returns results from term mappings without selecting a mapping parameter. What is the source of the mappings the Annotator Web service is using when called from the BioPortal Annotator Web page? I didn't see information on the mappings here: http://bioportal.bioontology.org/help?pop=true#Annotator_Tab and links from here to the "REST API documentation" point to documentation for the previous API.
>> 
>> Thanks for the help, 
>> Trish 
>> 
>> 
>> DKnet Project Lead
>> Ph: (858) 255-0478
>> 
>> University of California, San Diego
>> 9500 Gilman Drive, M/C 0608
>> La Jolla, CA 92093-0446
>> 
>> 
>> 
>> 
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> 

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