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[bioontology-support] [Biomodels-net-support] bioportal/ mapping

Camille Laibe laibe at
Mon Oct 28 02:56:56 PDT 2013

Dear Maxwell,

Unfortunately, there is currently no code or web services which would 
directly provide the mapping you are looking for.
However, this is one of the new features we are working on: provide a 
way to convert between different URI schemes (such as BioPortal and URIs). I expect this to be released early next year.
In the meantime, you can use the XML or RDF export of the Registry [1] 
to extract this mapping.

Hope this helps.


On 28/10/13 02:27, Maxwell Neal wrote:
> Hi,
> I was wondering - is there code or a web service that provides mappings
> between BioPortal URI's to their equivalent
> <> URI's?
> I'm working on a Java program that will need to convert a bunch of
> BioPortal URI's to <> URI's, and
> vice versa.
> Many thanks!
> M
> ---------------------------------
> Maxwell Neal
> Post-doctoral researcher
> Department of Bioengineering
> University of Washington
> mneal at <mailto:mneal at>
> ---------------------------------

Camille Laibe Coordinator
European Bioinformatics Institute (EMBL-EBI), Cambridge, UK

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