Search Mailing List Archives


Limit search to: Subject & Body Subject Author
Sort by: Reverse Sort
Limit to: All This Week Last Week This Month Last Month
Select Date Range     through    

[bioontology-support] Problem with accessing RDF for the ontology instances.

Ray Fergerson ray.fergerson at stanford.edu
Wed Sep 18 17:15:00 PDT 2013


I suspect that this isn’t worth tracking down in the current system. Even
if we figured it out and there was a problem we wouldn’t fix it now. Try
again in the new system after it is announced and we will try to do
something reasonable. Please respond if we do not




Ray



From: bioontology-support-bounces at lists.stanford.edu
[mailto:bioontology-support-bounces at lists.stanford.edu] On Behalf Of
Matthias Palmér
Sent: Tuesday, September 17, 2013 1:19 AM
To: bioontology-support at lists.stanford.edu
Subject: [bioontology-support] Problem with accessing RDF for the ontology
instances.



Hi again,

(I wrote two mails since it was two different kinds of questions..)



I understand you are just about to change the infrastructure to a
triple-store, great!

Maybe this means that I only need to wait a week and everything will work
as expected, if so, just tell me to be patient. :-)

In any case I describe the practical problem I have:



I cannot get any RDF representation for the URIs I find. For example,
using content negotiation to get RDF/XML yields a server error back
(status code 500 after three! redirects).





Using wget I get:

wget --header='accept:application/rdf+xml'
http://purl.bioontology.org/ontology/SNOMEDCT/123037004

--2013-09-17 09:29:06--
http://purl.bioontology.org/ontology/SNOMEDCT/123037004

Resolving purl.bioontology.org (purl.bioontology.org)... 171.67.213.41

Connecting to purl.bioontology.org
(purl.bioontology.org)|171.67.213.41|:80... connected.

HTTP request sent, awaiting response... 302 Moved Temporarily

Location: http://bioportal.bioontology.org/virtual/1353/123037004
[following]

--2013-09-17 09:29:06--
http://bioportal.bioontology.org/virtual/1353/123037004

Resolving bioportal.bioontology.org (bioportal.bioontology.org)...
171.67.213.48

Connecting to bioportal.bioontology.org
(bioportal.bioontology.org)|171.67.213.48|:80... connected.

HTTP request sent, awaiting response... 302

Location:
http://bioportal.bioontology.org/visualize/46896/?conceptid=123037004
[following]

--2013-09-17 09:29:07--
http://bioportal.bioontology.org/visualize/46896/?conceptid=123037004

Connecting to bioportal.bioontology.org
(bioportal.bioontology.org)|171.67.213.48|:80... connected.

HTTP request sent, awaiting response... 301

Location: http://bioportal.bioontology.org/ontologies/46896?p=terms
<http://bioportal.bioontology.org/ontologies/46896?p=terms&conceptid=12303
7004> &conceptid=123037004 [following]

--2013-09-17 09:29:07--
http://bioportal.bioontology.org/ontologies/46896?p=terms
<http://bioportal.bioontology.org/ontologies/46896?p=terms&conceptid=12303
7004> &conceptid=123037004

Connecting to bioportal.bioontology.org
(bioportal.bioontology.org)|171.67.213.48|:80... connected.

HTTP request sent, awaiting response... 500

2013-09-17 09:30:08 ERROR 500: (no description).



Also, as you might expect I am a bit confused over why you respond with
two 302 and then a 301 redirect before giving a response (in this case
failing to do so). I would have expected a single 303 redirect (see
other).





Greetings,

Matthias Palmér

http://metasolutions.se







-------------- next part --------------
An HTML attachment was scrubbed...
URL: <http://mailman.stanford.edu/pipermail/bioontology-support/attachments/20130918/2defd45e/attachment-0001.html>


More information about the bioontology-support mailing list