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[bioontology-support] Problem with accessing RDF for the ontology instances.

Matthias Palmér matthias at metasolutions.se
Wed Sep 18 23:42:14 PDT 2013


Thanks for the response,
will try again later with the new system as you suggested.

/Matthias

On Thu, Sep 19, 2013 at 2:15 AM, Ray Fergerson
<ray.fergerson at stanford.edu>wrote:

> I suspect that this isn’t worth tracking down in the current system. Even
> if we figured it out and there was a problem we wouldn’t fix it now. Try
> again in the new system after it is announced and we will try to do
> something reasonable. Please respond if we do not…****
>
> ** **
>
> Ray****
>
> ** **
>
> *From:* bioontology-support-bounces at lists.stanford.edu [mailto:
> bioontology-support-bounces at lists.stanford.edu] *On Behalf Of *Matthias
> Palmér
> *Sent:* Tuesday, September 17, 2013 1:19 AM
> *To:* bioontology-support at lists.stanford.edu
> *Subject:* [bioontology-support] Problem with accessing RDF for the
> ontology instances.****
>
> ** **
>
> Hi again,****
>
> (I wrote two mails since it was two different kinds of questions..)****
>
> ** **
>
> I understand you are just about to change the infrastructure to a
> triple-store, great!****
>
> Maybe this means that I only need to wait a week and everything will work
> as expected, if so, just tell me to be patient. :-)****
>
> In any case I describe the practical problem I have:****
>
> ** **
>
> I cannot get any RDF representation for the URIs I find. For example,
> using content negotiation to get RDF/XML yields a server error back (status
> code 500 after three! redirects).****
>
> ** **
>
> ** **
>
> Using wget I get: ****
>
> wget --header='accept:application/rdf+xml'
> http://purl.bioontology.org/ontology/SNOMEDCT/123037004****
>
> --2013-09-17 09:29:06--
> http://purl.bioontology.org/ontology/SNOMEDCT/123037004****
>
> Resolving purl.bioontology.org (purl.bioontology.org)... 171.67.213.41****
>
> Connecting to purl.bioontology.org (purl.bioontology.org)|171.67.213.41|:80...
> connected.****
>
> HTTP request sent, awaiting response... 302 Moved Temporarily****
>
> Location: http://bioportal.bioontology.org/virtual/1353/123037004[following]
> ****
>
> --2013-09-17 09:29:06--
> http://bioportal.bioontology.org/virtual/1353/123037004****
>
> Resolving bioportal.bioontology.org (bioportal.bioontology.org)...
> 171.67.213.48****
>
> Connecting to bioportal.bioontology.org (bioportal.bioontology.org)|171.67.213.48|:80...
> connected.****
>
> HTTP request sent, awaiting response... 302 ****
>
> Location:
> http://bioportal.bioontology.org/visualize/46896/?conceptid=123037004[following]
> ****
>
> --2013-09-17 09:29:07--
> http://bioportal.bioontology.org/visualize/46896/?conceptid=123037004****
>
> Connecting to bioportal.bioontology.org (bioportal.bioontology.org)|171.67.213.48|:80...
> connected.****
>
> HTTP request sent, awaiting response... 301 ****
>
> Location:
> http://bioportal.bioontology.org/ontologies/46896?p=terms&conceptid=123037004[following]
> ****
>
> --2013-09-17 09:29:07--
> http://bioportal.bioontology.org/ontologies/46896?p=terms&conceptid=123037004
> ****
>
> Connecting to bioportal.bioontology.org (bioportal.bioontology.org)|171.67.213.48|:80...
> connected.****
>
> HTTP request sent, awaiting response... 500 ****
>
> 2013-09-17 09:30:08 ERROR 500: (no description).****
>
> ** **
>
> Also, as you might expect I am a bit confused over why you respond with
> two 302 and then a 301 redirect before giving a response (in this case
> failing to do so). I would have expected a single 303 redirect (see other).
> ****
>
> ** **
>
> ** **
>
> Greetings,****
>
> Matthias Palmér****
>
> http://metasolutions.se****
>
> ** **
>
>   ****
>
> ** **
>
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