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[bioontology-support] UMLS semantic types in NCBO Annotator and SPARQL endpoint

Jael GarcíaCastro leyla.jael.garcia at
Tue Sep 24 12:09:01 PDT 2013

Hi all,

I tried DESCRIBE <> at The description includes the UMLS semantic
type as


I noticed that the URL does not resolve.
Do you plan these UMLS semantic type URLs to be resolvable?

I also tried the NCBO Annotator the term "serotonin"
and the ontology MeSH. This term is associated to
the UMLS semantic type T016. However, if I retrieve the annotation in the
XML format using the  option "Format Result As", the semantic type
retrieved is T999 "NCBO BioPortal concept". I was expecting T016, is not
the semantic type reported by the annotator the UMLS one?

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