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[bioontology-support] specify ontologies in annotator

Philippe Soares soaresp2 at gmail.com
Mon Feb 24 10:47:49 PST 2014


The ontologies parameter only needs the acronyms of your ontologies, not
the full URL...
That would be HRDO <http://data.bioontology.org/ontologies/HRDO>, not
http://data.bioontology.org/ontologies/HRDO...


2014-02-24 13:18 GMT-05:00 Willy <willy.wolff at etu.unistra.fr>:

> Hi, i'm new in using the annotator service.
>
> I try to annotate a text, constaint to using only specific ontologies like
> this:
>
> http://data.bioontology.org/annotator?ontologies=http://data.bioontology.org/ontologies/HRDO&text=Melanoma+is+a+malignant+tumor+of+melanocytes+which+are+found+predominantly+in+skin+but+also+in+the+bowel+and+the+eye
> .
>
> This is working in webbrowser.
>
> I try using the service with java and post method with this:
>
> PostMethod method = new PostMethod("http://data.bioontology.org/annotator
> ");
> method.addParameter("text", "Melanoma is a malignant tumor of melanocytes
> which are found predominantly in skin but also in the bowel and the eye.");
> method.addParameter ("ontologies",
> "http://data.bioontology.org/ontologies/HRDO");
>
>
> If I don't add ontologies parameter is working, and result is annotation
> with all ontologies, I conclude my process is correct.
> But when I specify ontologies parameter, the result is empty.
> Did I do something wrong?
>
>
>
>
>
> --
> View this message in context:
> http://ncbo-support.2288202.n4.nabble.com/specify-ontologies-in-annotator-tp4652596.html
> Sent from the NCBO Support mailing list archive at Nabble.com.
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> bioontology-support at lists.stanford.edu
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