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[bioontology-support] new Bio API

Sergey Nikitin snikitin at io-informatics.com
Tue Feb 25 02:19:37 PST 2014


Hi Support,

    In the old API the ontologies request returned a lot of information about each item. We are trying to find a way to receive alomost the same results with the new API.

            In the new API one can receive an ontology list in json format using URL: http://data.bioontology.org/ontologies?apikey={api-key}

    The result structures contain links to other objects, like:
{
"administeredBy": [
"http://data.bioontology.org/users/pjd"<http://data.bioontology.org/users/pjd>
],

  *
     *

     Is there a way to receive ontologies with data obtained by following the links in one request? For example:
{
"administeredBy": ["<http://data.bioontology.org/users/pjd>

  *   username": "pjd",
  *   "email": "pdevries at wisc.edu",
  *   "role": [
     *   "LIBRARIAN"
],
  *   "@id": "http://data.bioontology.org/users/pjd"<http://data.bioontology.org/users/pjd>,
  *   "@type": "http://data.bioontology.org/metadata/User"<http://data.bioontology.org/metadata/User>,
  *

"@context": {
     *   "@vocab": "http://data.bioontology.org/metadata/"<http://data.bioontology.org/metadata/>
}

],

 Perhaps, this is not the right approach? Then, what you recommend?
 https://bioportal.bioontology.org/ontologies loads pretty fast. We want to achive the same result.

Thanks,
Sergey Nikitin
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